Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ABC804_RS00395 Genome accession   NZ_CP155536
Coordinates   60206..60964 (-) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 55206..65964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS00370 (ABC804_00370) pth 55239..55808 (-) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -
  ABC804_RS00375 (ABC804_00375) ychF 55879..56994 (-) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  ABC804_RS00380 (ABC804_00380) - 57078..57272 (-) 195 WP_000285194.1 DUF951 family protein -
  ABC804_RS00385 (ABC804_00385) dnaN 57337..58473 (-) 1137 WP_000581155.1 DNA polymerase III subunit beta -
  ABC804_RS00390 (ABC804_00390) dnaA 58632..59993 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  ABC804_RS00395 (ABC804_00395) spo0J 60206..60964 (-) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  ABC804_RS00400 (ABC804_00400) htrA 61022..62203 (-) 1182 WP_000681597.1 trypsin-like peptidase domain-containing protein Regulator
  ABC804_RS00405 (ABC804_00405) rlmH 62386..62865 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABC804_RS00415 (ABC804_00415) comC/comC1 63148..63273 (+) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  ABC804_RS00420 (ABC804_00420) comD/comD1 63294..64619 (+) 1326 WP_014632435.1 competence system sensor histidine kinase ComD Regulator
  ABC804_RS00425 (ABC804_00425) comE 64616..65368 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=997382 ABC804_RS00395 WP_000410383.1 60206..60964(-) (spo0J) [Streptococcus pneumoniae strain M264-3]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=997382 ABC804_RS00395 WP_000410383.1 60206..60964(-) (spo0J) [Streptococcus pneumoniae strain M264-3]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504

Multiple sequence alignment