Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GZL_RS42020 Genome accession   NZ_CP003987
Coordinates   9778064..9779872 (-) Length   602 a.a.
NCBI ID   WP_052287295.1    Uniprot ID   -
Organism   Streptomyces sp. 769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 9773064..9784872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZL_RS42005 (GZL_09195) - 9773456..9774793 (+) 1338 WP_078876134.1 lysophospholipid acyltransferase family protein -
  GZL_RS42010 (GZL_09196) - 9774954..9776381 (+) 1428 WP_078876135.1 MFS transporter -
  GZL_RS42015 (GZL_09198) ccrA 9776573..9777922 (-) 1350 WP_039639643.1 crotonyl-CoA carboxylase/reductase -
  GZL_RS42020 (GZL_09199) rcrQ 9778064..9779872 (-) 1809 WP_052287295.1 ABC transporter ATP-binding protein Regulator
  GZL_RS42025 (GZL_09200) - 9779850..9781661 (-) 1812 WP_039639645.1 ABC transporter ATP-binding protein -
  GZL_RS42030 (GZL_09201) - 9782049..9783080 (+) 1032 WP_039639646.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 64919.59 Da        Isoelectric Point: 7.2705

>NTDB_id=99738 GZL_RS42020 WP_052287295.1 9778064..9779872(-) (rcrQ) [Streptomyces sp. 769]
MVSADSSSRGRRSPARHLLGLLRPHRALVSVAVALGIGGVALNAAGPILLGRATDLVFDGIRHTHGSGGVDFDAIARVLL
FALVLFVTASLLTLFQGRLVSAVVQRVVFALRRSVEAKLARLPLRYFDRHPAGEVLSRVTNDVDNLQQTLQQTLSQLITA
VFSVLSMLVLMLVISPLLALIMLACLPVSVVLTARISKRAQPRFARQWSATGALNAHVEEVYTGHALVKGFGRREQAERA
FDEHNEALYRAGARAQFVSGAIEPSMMFVSNLGYVVVAVVGALRVVAGTLSIGDVQAFILYSRQFSQPIVEVAGIAARLQ
SALASAERIQELLDADEQRPDSDHPARLDTVGGHVEFEKVHFRYSPGTPLIEDLSLTVEPGRTVAVVGPTGAGKTTLGNL
LMRFYEIDSGRILLDGTDITTLTREDLRSHIGLVLQDAWLFSGTIAENIAYGRPDATRAEIVAAARATCADRFIRTLPDG
YDTVLDEESTNISAGEKQLVTIARAFLARPSILLLDEATSSVDTRTEALIQRAMHSLRAGRTSFVIAHRLSTIRDADLIL
VMEGGRIVEQGTHDQLLAAAGPYARLHTAVEHGAGLEDAASR

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=99738 GZL_RS42020 WP_052287295.1 9778064..9779872(-) (rcrQ) [Streptomyces sp. 769]
ATGGTCTCGGCGGACAGCTCTAGCCGCGGGCGGCGCAGCCCCGCCCGCCACCTGCTGGGCCTCCTGCGACCGCACCGTGC
CCTGGTTTCCGTGGCGGTCGCCCTCGGGATCGGCGGCGTCGCGCTCAACGCGGCGGGCCCGATACTCCTCGGCAGGGCCA
CCGACCTGGTCTTCGACGGCATCCGGCACACCCACGGATCCGGCGGAGTCGACTTCGACGCGATCGCCCGGGTGCTGCTG
TTCGCGCTGGTGCTCTTCGTCACCGCCTCCTTGCTCACCCTCTTCCAGGGCCGGCTGGTCTCGGCCGTCGTGCAGCGTGT
GGTCTTCGCGCTGCGCCGGTCCGTGGAGGCCAAGCTCGCCCGCCTGCCGCTGCGGTACTTCGACCGCCATCCGGCGGGTG
AGGTGCTCAGCCGGGTGACCAATGACGTCGACAACCTCCAGCAGACCCTCCAGCAGACCCTCAGCCAGCTGATCACGGCG
GTGTTCTCCGTGCTGAGCATGCTGGTCCTGATGCTCGTCATCTCGCCGCTGCTGGCACTGATCATGCTGGCCTGTCTGCC
GGTGTCGGTCGTGCTCACGGCCCGGATCAGCAAGCGCGCACAGCCGCGGTTCGCCCGTCAGTGGTCCGCCACCGGAGCGC
TGAACGCCCATGTCGAGGAGGTCTACACCGGTCACGCGCTGGTCAAGGGCTTCGGGCGGCGCGAGCAGGCCGAGCGCGCC
TTCGACGAGCACAACGAAGCCCTCTACCGCGCCGGCGCACGGGCCCAGTTCGTCTCCGGCGCCATCGAGCCGTCGATGAT
GTTCGTCTCCAACCTCGGCTATGTCGTGGTGGCGGTCGTCGGCGCGCTGCGCGTGGTCGCCGGGACCCTGTCCATCGGTG
ACGTCCAGGCGTTCATCCTCTACTCCCGGCAGTTCAGCCAACCGATCGTCGAGGTCGCCGGCATCGCCGCCCGCCTGCAG
TCCGCCCTCGCCTCCGCGGAGCGGATCCAGGAGCTCCTGGACGCGGACGAGCAGCGACCCGACTCCGACCACCCCGCACG
TCTGGACACGGTCGGCGGACATGTCGAGTTCGAGAAGGTCCACTTCCGCTACTCCCCCGGCACCCCGCTCATCGAGGACC
TCTCCCTCACCGTCGAACCCGGCCGGACCGTGGCGGTCGTCGGTCCGACCGGCGCCGGCAAGACCACCCTGGGCAACCTC
CTCATGCGCTTCTACGAAATCGACAGCGGGCGCATCCTCCTCGACGGCACGGACATCACCACCCTGACCCGCGAGGACCT
GCGCTCCCACATCGGCCTGGTGCTCCAGGACGCCTGGCTCTTCTCCGGCACCATCGCCGAGAACATCGCCTACGGACGCC
CCGACGCCACCCGCGCGGAGATCGTGGCCGCCGCCCGCGCCACCTGCGCCGACCGCTTCATCCGCACCCTGCCGGACGGC
TACGACACCGTACTGGACGAGGAGTCGACCAATATCAGCGCGGGCGAGAAGCAGCTCGTCACCATCGCGCGGGCCTTCCT
GGCCCGGCCCTCGATCCTGCTCCTGGACGAGGCGACCAGCTCCGTCGACACCCGCACGGAGGCGCTCATCCAACGCGCGA
TGCACTCGCTGCGCGCGGGCCGCACCAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCGGACCTGATCCTC
GTCATGGAAGGCGGCCGCATCGTCGAGCAGGGCACCCACGACCAGCTGCTGGCCGCCGCAGGGCCCTACGCCCGGCTGCA
CACGGCCGTGGAGCACGGTGCCGGGCTGGAGGACGCGGCATCCCGTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(372-520)

ABC transporter transmembrane region (ABC_membrane)

(32-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.969

96.179

0.404

Multiple sequence alignment