Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GZL_RS26140 Genome accession   NZ_CP003987
Coordinates   6142824..6145049 (+) Length   741 a.a.
NCBI ID   WP_039636267.1    Uniprot ID   A0ABY8AF20
Organism   Streptomyces sp. 769     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6137824..6150049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZL_RS26120 (GZL_05681) - 6138458..6139315 (-) 858 WP_052287525.1 sugar phosphate isomerase/epimerase family protein -
  GZL_RS26125 (GZL_05683) - 6139600..6140748 (+) 1149 WP_078875893.1 Gfo/Idh/MocA family oxidoreductase -
  GZL_RS26130 (GZL_05684) - 6140745..6141881 (+) 1137 WP_039636263.1 dihydrodipicolinate synthase family protein -
  GZL_RS26135 (GZL_05685) - 6141878..6142753 (+) 876 WP_039636265.1 sugar phosphate isomerase/epimerase family protein -
  GZL_RS26140 (GZL_05686) recD/recD2/recDB 6142824..6145049 (+) 2226 WP_039636267.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GZL_RS26145 (GZL_05687) - 6145226..6146515 (+) 1290 WP_039636269.1 citrate synthase -
  GZL_RS26150 (GZL_05688) - 6147219..6147506 (-) 288 WP_039636271.1 heavy-metal-associated domain-containing protein -
  GZL_RS26155 (GZL_05689) - 6147760..6148452 (+) 693 WP_039636273.1 DedA family protein -
  GZL_RS26160 (GZL_05690) - 6148483..6149052 (+) 570 WP_052286884.1 GNAT family N-acetyltransferase -
  GZL_RS26165 (GZL_05691) - 6149175..6150026 (-) 852 WP_052287526.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79594.95 Da        Isoelectric Point: 6.8334

>NTDB_id=99715 GZL_RS26140 WP_039636267.1 6142824..6145049(+) (recD/recD2/recDB) [Streptomyces sp. 769]
MVNAAVVEGVLERITYANEDNGYTVARVDTGRGSGELLTVVGALLGAQPGESLRLEGRWGSHPQYGKQFTVDNYTTVLPA
TVQGIRRYLGSGLIKGIGPRIADRITEHFGIDTLDVIESDPGRLIEVPGLGPKRTKLIGAAWEEQKAIKEVMVFLQGVGV
STSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADRIAQSVGIPHDSPDRVKSGLQYALSQSTDQGHCFLPEEQL
IADAVKLLQVDTGLVIDCLAELAADPEGVVREKVPGPEDGAPVTAVYLVPFHRAELSLAGRLTRLLRTDEDRMPAFQDVD
WDKALAWLARRTGAQLAPEQQAAVRLALTSKVAVLTGGPGCGKSFTVRSVVELARAKQATVVLAAPTGRAAKRLAELTGA
DASTVHRLLELKPGGDAAYDADRPLDADLVVVDEASMLDLLLANKLVKAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLAE
SGPGRGGRVPAVRLTKIFRQAQQSGVVTNAHRINSGVPPLTSGLADFFLFPEEDAEEAARLTVDVVARRIPAKFDLDPRR
DVQVLAPMHRGPAGAGALNGLLQQAVTPARPDLPERRFGGRVFRVGDKVTQIRNNYEKGLNGVFNGTVGVVTALDTVEQR
LTVRTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTSAWMMLQRNLLYTAVTRAKRLVVLVGSRRALGQA
VRTVSAGRRHTALDHRLAGAI

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=99715 GZL_RS26140 WP_039636267.1 6142824..6145049(+) (recD/recD2/recDB) [Streptomyces sp. 769]
ATGGTCAACGCAGCCGTGGTGGAAGGGGTCCTTGAGCGGATCACCTATGCCAACGAGGACAACGGTTACACGGTCGCGCG
GGTCGACACGGGCCGTGGCTCCGGGGAGCTGCTGACCGTCGTCGGCGCGCTGTTGGGGGCGCAGCCGGGGGAGTCGCTCC
GGTTGGAGGGCCGCTGGGGCTCCCACCCCCAGTACGGCAAGCAGTTCACGGTCGACAACTACACCACCGTGCTGCCCGCC
ACCGTCCAGGGCATCCGCCGCTATCTGGGCTCGGGCCTCATCAAGGGCATCGGCCCCCGGATCGCCGACCGCATCACCGA
GCACTTCGGCATCGACACCCTCGACGTGATCGAGAGCGACCCCGGCCGGCTGATCGAGGTGCCCGGGTTGGGCCCCAAGC
GCACCAAGCTGATCGGCGCCGCCTGGGAGGAGCAGAAGGCCATCAAGGAGGTCATGGTCTTCCTCCAGGGCGTCGGCGTG
TCCACCTCCATCGCCGTGCGGATCTACAAGAAGTACGGCGACGCGTCGATCTCCGTGGTGAAGAACCAGCCCTACCGCCT
GGCCGCCGACGTCTGGGGCATCGGCTTCCTGACCGCCGACCGCATCGCCCAGTCGGTGGGCATCCCGCACGACAGCCCGG
ACCGGGTCAAGTCCGGCCTCCAGTACGCCCTGTCGCAGTCCACGGACCAGGGCCACTGCTTCCTGCCCGAGGAGCAACTG
ATCGCGGACGCGGTGAAGTTGCTCCAGGTGGACACCGGCCTGGTCATCGACTGCCTGGCCGAGCTGGCCGCGGACCCGGA
GGGCGTGGTGCGGGAGAAGGTCCCCGGCCCGGAGGACGGTGCTCCGGTCACCGCTGTCTATCTGGTGCCGTTCCACCGCG
CCGAGCTCTCCCTGGCCGGGCGGCTGACCCGGTTGTTGCGCACCGACGAGGACCGGATGCCCGCCTTCCAGGACGTGGAC
TGGGACAAGGCGCTGGCGTGGCTGGCGCGGCGCACGGGGGCGCAGCTGGCCCCCGAGCAGCAGGCCGCCGTCCGGCTGGC
GCTGACCAGCAAGGTCGCGGTGCTCACGGGCGGCCCGGGCTGCGGCAAGTCGTTCACCGTCCGCTCGGTGGTCGAGCTGG
CCCGCGCCAAGCAGGCCACGGTGGTGCTGGCGGCGCCCACGGGCCGGGCGGCCAAGCGGCTGGCGGAGCTGACCGGTGCG
GACGCCTCCACCGTCCACCGCCTGCTGGAGCTCAAACCGGGCGGGGACGCCGCCTACGACGCGGACCGTCCGCTGGACGC
CGATCTGGTGGTGGTCGACGAGGCGTCGATGCTCGACCTGCTGTTGGCGAACAAGCTCGTCAAGGCGGTGCCGCCGGGCG
CGCATCTGCTGCTGGTGGGGGACGTGGACCAGCTGCCGTCGGTGGGCGCCGGCGAGGTGTTGCGCGATCTGCTGGCCGAG
TCGGGGCCCGGTCGGGGCGGCCGGGTGCCGGCCGTCCGGCTGACCAAGATCTTCCGCCAGGCCCAGCAGTCCGGCGTGGT
CACCAACGCGCACCGCATCAATTCCGGCGTCCCCCCGCTGACCAGCGGTCTTGCGGATTTCTTCCTGTTCCCCGAGGAGG
ACGCGGAGGAGGCCGCCCGGCTGACGGTGGACGTGGTCGCGCGCCGCATCCCGGCGAAGTTCGACCTCGACCCGCGCCGG
GACGTCCAGGTGCTGGCCCCGATGCACCGCGGCCCGGCCGGCGCGGGGGCGCTCAACGGCCTGCTCCAGCAGGCGGTGAC
CCCGGCCCGCCCGGATCTGCCGGAGCGCCGCTTCGGCGGCCGGGTCTTCCGCGTCGGCGACAAGGTCACCCAGATCCGGA
ACAACTACGAGAAGGGCCTCAACGGCGTCTTCAACGGCACGGTGGGGGTGGTCACCGCCCTGGACACCGTCGAGCAGCGG
CTGACGGTCCGCACGGACGAGGACGAGGAGGTGCCGTACGACTTCGACGAACTGGACGAACTCGCCCACGCCTACGCGGT
GACGATCCATCGCTCCCAGGGGAGCGAGTATCCGGCGGTGGTGATTCCGGTCACCACCAGCGCCTGGATGATGCTCCAGC
GCAACCTGCTCTATACGGCCGTGACCCGGGCGAAACGCCTGGTGGTGCTGGTCGGCTCCCGCAGGGCCCTCGGACAGGCC
GTACGCACGGTATCCGCCGGTCGGAGGCACACCGCGTTGGATCACCGGCTCGCCGGAGCGATCTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_30)

(335-519)

Helix-hairpin-helix domain (HHH_5)

(94-138)

Helix-hairpin-helix containing domain (HHH_RecD2)

(144-234)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(578-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(663-711)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

34.72

100

0.36