Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAH687_RS15655 Genome accession   NZ_CP155530
Coordinates   3053693..3054472 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain TN5S8     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3048693..3059472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH687_RS15625 (AAH687_15625) fliH 3048806..3049570 (-) 765 WP_048002828.1 flagellar assembly protein FliH -
  AAH687_RS15630 (AAH687_15630) fliG 3049563..3050579 (-) 1017 WP_017367244.1 flagellar motor switch protein FliG -
  AAH687_RS15635 (AAH687_15635) fliF 3050591..3052183 (-) 1593 WP_202734498.1 flagellar basal-body MS-ring/collar protein FliF -
  AAH687_RS15640 (AAH687_15640) fliE 3052234..3052551 (-) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  AAH687_RS15645 (AAH687_15645) flgC 3052563..3053015 (-) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  AAH687_RS15650 (AAH687_15650) flgB 3053015..3053404 (-) 390 WP_202734499.1 flagellar basal body rod protein FlgB -
  AAH687_RS15655 (AAH687_15655) codY 3053693..3054472 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAH687_RS15660 (AAH687_15660) hslU 3054507..3055907 (-) 1401 WP_202734500.1 HslU--HslV peptidase ATPase subunit -
  AAH687_RS15665 (AAH687_15665) hslV 3055924..3056469 (-) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  AAH687_RS15670 (AAH687_15670) xerC 3056484..3057401 (-) 918 WP_007499616.1 tyrosine recombinase XerC -
  AAH687_RS15675 (AAH687_15675) trmFO 3057464..3058768 (-) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=996968 AAH687_RS15655 WP_007499612.1 3053693..3054472(-) (codY) [Bacillus altitudinis strain TN5S8]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=996968 AAH687_RS15655 WP_007499612.1 3053693..3054472(-) (codY) [Bacillus altitudinis strain TN5S8]
ATGGCGTTACTACAAAAAACAAGAATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCTATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCCGGTTTGACAACGATTGTGCCAATTATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAATGAAGGGCTGCTTGTCGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment