Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSS89_RS12390 Genome accession   NZ_CP155471
Coordinates   2479362..2481758 (-) Length   798 a.a.
NCBI ID   WP_346206404.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL K6-2831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2474362..2486758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS89_RS12370 (NSS89_12370) - 2474455..2474724 (-) 270 WP_034771279.1 IreB family regulatory phosphoprotein -
  NSS89_RS12375 (NSS89_12375) alaS 2474948..2477578 (-) 2631 WP_034771281.1 alanine--tRNA ligase -
  NSS89_RS12380 (NSS89_12380) - 2477952..2479019 (-) 1068 WP_034771282.1 AI-2E family transporter -
  NSS89_RS12385 (NSS89_12385) - 2479065..2479259 (-) 195 WP_034771285.1 hypothetical protein -
  NSS89_RS12390 (NSS89_12390) recD2 2479362..2481758 (-) 2397 WP_346206404.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSS89_RS12395 (NSS89_12395) mnmA 2482042..2483166 (-) 1125 WP_269147496.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSS89_RS12400 (NSS89_12400) - 2483178..2484323 (-) 1146 WP_034771291.1 cysteine desulfurase family protein -
  NSS89_RS12405 (NSS89_12405) - 2484390..2484812 (-) 423 WP_034771297.1 Rrf2 family transcriptional regulator -
  NSS89_RS12410 (NSS89_12410) - 2484951..2485601 (-) 651 WP_034771299.1 YitT family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90606.65 Da        Isoelectric Point: 5.2959

>NTDB_id=996807 NSS89_RS12390 WP_346206404.1 2479362..2481758(-) (recD2) [Caldifermentibacillus hisashii strain FSL K6-2831]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTDHPKYGPQFQVDHFR
KDLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDTVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLSMRIYQTYKEHTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQQGHCY
LEKKTFIPTVKKLLESNQPVEIFPEEIEHELLKLEEEGKIVIDEERVFLPSIFYSEKGLVTNIKRILAQKEFEDGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRNQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKDIQVLAPMYRGPAGIDELNILLQEILNGTNKEKRRELNFGDHTYRVGDKVLQLINQPDKNIFNGDIGEIVAIFY
AKETEEKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGNHTPDIGVVKEDMSYEERLMNTDPMVGMENISPYDFMIEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=996807 NSS89_RS12390 WP_346206404.1 2479362..2481758(-) (recD2) [Caldifermentibacillus hisashii strain FSL K6-2831]
ATGCAACAAGAAGAACGTTATATTAAGGGCAGACCGATCGTCACCATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTGAACAAAGATGCGGTTGTCACCGGCTATTTCCCCCGTCTGTATG
AAGAGGAAACTTATATTTTTTACGGAAAGTTTACGGATCATCCAAAATATGGTCCACAATTTCAAGTTGACCATTTTCGA
AAAGATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATTTATCAAGTGAACTTTTTAAAGGAATTGGAAAGAAAACGGC
TGAAAATATTGTGGACGTTCTGGGTGAAAATGCTATCGAACGCATCATGAAACAGCCGTCTTTATTGGACACGGTACCGA
AATTGGCTGCTGATAAAGCAAAATTGTTACATGAAAAATTAATAGAGTATCAAGGGTTAGAAAATATTATGGTCGGGTTG
AATCAATACGGGTTCGGTCCGCAGCTGTCTATGCGAATCTATCAAACATATAAAGAGCATACACTGGAAATCGTCGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAATTAGGCTTTAAACTCGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAACAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTCATTCCGACTGTTAAAAAGTTGCTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGAAAT
TGAGCATGAACTTTTGAAACTGGAGGAAGAAGGAAAGATCGTCATCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGACGGCTTTCCGGAATCAGAA
TTTCTACTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCATCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAAAGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGGGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGATGGAATGG
AACAGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCTTTGCCTGCGCATGTGCAAGTAATTTTGGTCGGTGATGAAGATCAATTACCT
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGAAACCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCTGATGTCGTAAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGATATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAGCTGAATATACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCGAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGCG
ATAAAGTTTTGCAATTAATCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATCTTTTAT
GCAAAAGAGACAGAGGAAAAAGTTGATCAACTGGTCGTTTCGTTTGACGGTAATGAGGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATTTTATGC
GGGGAAGAGGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAACGATTATT
GCAAGAAATAAACGGAAATCACACTCCGGATATCGGGGTAGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGATTGAAGATAGAGCGGAATATTTAAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

AAA domain (AAA_30)

(336-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.538

99.373

0.612

Multiple sequence alignment