Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   MKZ19_RS08425 Genome accession   NZ_CP155470
Coordinates   1726522..1728879 (+) Length   785 a.a.
NCBI ID   WP_346244247.1    Uniprot ID   -
Organism   Shouchella clausii strain FSL M8-0080     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1721522..1733879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKZ19_RS08395 (MKZ19_08395) - 1721594..1721833 (+) 240 WP_094428732.1 hypothetical protein -
  MKZ19_RS08400 (MKZ19_08400) spoVB 1721870..1723420 (-) 1551 WP_094428730.1 stage V sporulation protein B -
  MKZ19_RS08405 (MKZ19_08405) - 1723589..1723879 (+) 291 WP_346244245.1 post-transcriptional regulator -
  MKZ19_RS08410 (MKZ19_08410) secD 1723914..1725215 (+) 1302 WP_095238202.1 protein translocase subunit SecD -
  MKZ19_RS08415 (MKZ19_08415) secF 1725205..1726140 (+) 936 WP_346244246.1 protein translocase subunit SecF -
  MKZ19_RS08420 (MKZ19_08420) - 1726158..1726460 (+) 303 WP_094428722.1 LapA family protein -
  MKZ19_RS08425 (MKZ19_08425) recJ 1726522..1728879 (+) 2358 WP_346244247.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  MKZ19_RS08430 (MKZ19_08430) - 1728869..1729384 (+) 516 WP_094428718.1 adenine phosphoribosyltransferase -
  MKZ19_RS08435 (MKZ19_08435) - 1729497..1731704 (+) 2208 WP_346244248.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  MKZ19_RS08440 (MKZ19_08440) dtd 1731725..1732165 (+) 441 WP_346244249.1 D-aminoacyl-tRNA deacylase -
  MKZ19_RS08445 (MKZ19_08445) - 1732393..1733400 (+) 1008 WP_011246416.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87793.47 Da        Isoelectric Point: 5.0648

>NTDB_id=996752 MKZ19_RS08425 WP_346244247.1 1726522..1728879(+) (recJ) [Shouchella clausii strain FSL M8-0080]
MLQAKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRN
ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI
GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLVDENRLL
AKKGLRAIESSGRPGIRALKEVCSIKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADEDEEAKALATEIDSLNKE
RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY
RELANNRDILPHFGGHPMAAGMTLKTNDIGDLRSRLIEQAKQTLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEDAHISDMRRIGSNQNHLKIQFAGAQKPLDGIAFRMGHLYEEITPHAKLSAIGTVSLNEWNGKVKPQLIID
DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYQQAPSFFEAYVVLLDLPSNRVELETL
FSKKGKPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKKQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
DGIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSTETKEESILNGL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=996752 MKZ19_RS08425 WP_346244247.1 1726522..1728879(+) (recJ) [Shouchella clausii strain FSL M8-0080]
ATGTTGCAAGCAAAAACAAGATGGCGCATTTTAGAACAGAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT
ATCGATGTTAACGGCCCGTCTGCTTGTACGCCGGGGAATCCAAACAGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG
AGCCGACGTTTTACGATCCCTTCTTGTTGAAAGGGATGGAAGAAACGATTGAACGAATCGCCCTCGCAGTCAAACGGAAC
GAACGCATTCTTGTTTTTGGTGACTATGATGCTGATGGTGTCAGTTCTACTTCCGTGATGCTAACAGCGTTACAAACGTA
TGGCGCCGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTTGACTTTGCAA
AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCTCATGCCAAAGACATC
GGCCTGGATTTTATTATCACTGACCACCACGAGCCGCCGCCGGTTTTGCCAGAGGCATTGGCGATCATTAATCCTAAGCA
GCCTGGTTGCCCGTATCCATTTAAAGAGCTTGCCGGTGTAGGCGTTGCCTTTAAAGTTGCACACGCTTTGCTCGGGCGCC
TGCCTGAAGAGTTGCTCGATTATGCTGTGATCGGTACGATCGCCGATTTGGTCCCACTCGTCGATGAAAATCGGCTGTTG
GCCAAAAAGGGGCTTCGCGCAATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCAGCATAAAGCA
GGAAGCAATGGACGCCGACCATATCGGCTTTGCGATTGGGCCTCGTCTAAATGCGGCAGGGCGGCTTGATTCTGCTAATC
CAGCCGTTGAGCTGCTCCTAGCTGATGAAGATGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA
CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTTGAAACAACTTATGGCACAAAGATCCCTCATGC
CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGAATTGTTGCTTCTCGCCTTGTAGAACAGTTTTACCGTC
CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCCAAAGGCTCGGCCAGAAGCATTGAAGGGTTTGACATGTAC
CGGGAATTAGCGAATAATCGGGACATACTCCCTCATTTTGGTGGACACCCGATGGCAGCAGGGATGACACTTAAAACAAA
CGACATTGGCGACTTACGTTCTCGTTTAATCGAGCAAGCCAAGCAGACACTTACTGACGACATGCTTACACCTGCCACGG
ATATAGACCTCGTTGCAGAGGTGGAGGATGTCACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCTCCGTTTGGCGTT
GCCAACCGTAAACCGATTGTACTTGTTGAGGATGCGCACATTTCCGATATGCGTCGGATTGGCAGCAACCAAAACCATTT
GAAAATCCAGTTTGCTGGCGCCCAAAAGCCGCTTGACGGAATAGCTTTTAGAATGGGGCATCTGTATGAAGAGATCACGC
CACATGCAAAGTTATCAGCAATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAACCACAGCTTATTATTGAC
GATCTCGCCGTATTGGAGTGGCAACTATTTGATTGGCGTAGCATCCAGCCAAACCGCTTAAACAGCCGGTTGCTTGACTT
GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAGGAAAGACTTGGGTTGGATGTACCCGTATATGATT
ACCAACAAGCGCCTTCCTTTTTTGAAGCTTATGTCGTATTGCTCGATTTGCCTAGCAACCGGGTTGAATTGGAAACTCTT
TTTTCTAAGAAAGGGAAACCAAGCCGTGTTTATGTTGTGTTCTCGGAGGAGGAAGAATCGTTTTTTCAAACGAATCCAAA
CCGTGAGCAGTTCAAATGGTATTACGGATTTATTAAGAAAAAACAACGCTTTTCACTGAATCAACTCGGCGCGAAGCTTG
AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATTAAGCTTGAC
GACGGCATCGTTGAAGCCGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACTTACCAAGCCAAGCAGGAAAA
AGCATGGCTTGAAAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGAAGGGAGCA
CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50

100

0.502

Multiple sequence alignment