Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ELZ47_RS10020 Genome accession   NZ_LR134002
Coordinates   2015396..2017762 (+) Length   788 a.a.
NCBI ID   WP_125330884.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010396..2022762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS10000 (NCTC10904_01962) - 2012772..2013323 (-) 552 WP_002903748.1 CvpA family protein -
  ELZ47_RS10005 (NCTC10904_01963) - 2013334..2013624 (-) 291 WP_002919703.1 hypothetical protein -
  ELZ47_RS10010 (NCTC10904_01964) rnhC 2013813..2014703 (+) 891 WP_164549610.1 ribonuclease HIII -
  ELZ47_RS10015 (NCTC10904_01965) lepB 2014707..2015336 (+) 630 WP_126435929.1 signal peptidase I -
  ELZ47_RS10020 (NCTC10904_01966) recD/recD2/recDB 2015396..2017762 (+) 2367 WP_125330884.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ELZ47_RS10025 (NCTC10904_01967) - 2017816..2018454 (-) 639 WP_125330883.1 TetR/AcrR family transcriptional regulator -
  ELZ47_RS10030 (NCTC10904_01968) - 2018685..2019359 (-) 675 Protein_1902 CPBP family intramembrane glutamic endopeptidase -
  ELZ47_RS10035 (NCTC10904_01969) - 2019405..2020199 (-) 795 WP_125330881.1 CPBP family intramembrane glutamic endopeptidase -
  ELZ47_RS10045 (NCTC10904_01970) - 2020519..2020845 (-) 327 WP_125330880.1 hypothetical protein -
  ELZ47_RS10050 (NCTC10904_01971) dinB 2021057..2022121 (-) 1065 WP_126435930.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88495.45 Da        Isoelectric Point: 4.5963

>NTDB_id=996739 ELZ47_RS10020 WP_125330884.1 2015396..2017762(+) (recD/recD2/recDB) [Streptococcus sanguinis strain NCTC 10904]
MEFYFSGTIERIIFENPSNFFRILLLDIEDTDAEDFEDFEIIVTGSMADVMEGEDYTFWGSLVQHPKYGQQLKISRYERA
KPSSKGLVKYFSSDHFKGIGVKTAQKIVQLYGEDSEDTIDKILAEPEKLTQINGLAAKNREAFVAKLRLNYGTEMVLAKL
AAYGIPNKLAFQIQDTYKEETLDIVEKYPYQLVEDIQGIGFKIADHLAEELGIQSDAPERFRAGLVHTLLTQSMERGDTY
VEARDLLKHTIELLESSRQVELAPSLVADELAHLIEEDKVQNVETKIFENSLFFAEEGIKSNLVRLLEKGEQDSFDQDKI
TAAIQQVEENSGISYDSIQKEAIRQAINQKVFILTGGPGTGKTTVINCIIAVYAQLRGLDLRKVNDLPILLAAPTGRAAR
RMNELTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSQTKLLIVGDADQLPSVSPGQV
LADLLQIPTIPQTKLETIYRQSEESTIVTLASQIQKGILPADFTEKKADRSYFEAKNEHIPPMIEKIASAAIRSGIPAQD
VQVLAPMYRGPAGIDQINNLMQNLINPVEKEELTFEAPDCQYRQGDRVIHLVNDAESNVFNGDLGYISDLLPAKYTDSKQ
DELTIDFDGNELVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLIYTAITRAKSKLILLGEKAAFDY
AAKNTGTARKTYLIERFGDLPQAETNIHNPVDKMKAPVENYVLTKENFLKIDPLIGLTEEDIHSIFST

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=996739 ELZ47_RS10020 WP_125330884.1 2015396..2017762(+) (recD/recD2/recDB) [Streptococcus sanguinis strain NCTC 10904]
ATGGAATTTTACTTTTCAGGAACGATTGAACGGATTATTTTTGAAAATCCCAGCAACTTTTTCCGCATCCTGCTCTTAGA
TATTGAGGATACAGATGCCGAGGATTTTGAAGATTTTGAAATCATTGTCACCGGCTCTATGGCAGATGTCATGGAAGGCG
AAGATTACACTTTCTGGGGCAGTCTCGTCCAGCACCCCAAATATGGCCAGCAGCTGAAAATTTCTCGCTATGAGCGAGCC
AAACCCAGCAGTAAAGGCCTAGTAAAATACTTCTCCAGCGACCATTTCAAGGGCATCGGGGTCAAGACAGCTCAAAAAAT
CGTCCAACTCTACGGAGAAGATAGCGAGGACACCATTGACAAGATTTTAGCAGAGCCGGAAAAGCTGACTCAGATAAATG
GCTTAGCTGCCAAGAACCGCGAGGCCTTTGTCGCCAAGCTCAGACTCAACTATGGAACTGAGATGGTACTAGCTAAGCTG
GCAGCCTACGGCATTCCCAATAAACTGGCTTTTCAGATCCAGGATACCTACAAGGAAGAAACGCTGGACATTGTCGAAAA
ATATCCCTATCAGCTGGTAGAGGATATTCAGGGGATCGGCTTTAAAATCGCTGACCATCTGGCAGAAGAGCTGGGGATCC
AAAGTGATGCCCCTGAGCGTTTTCGGGCTGGCCTTGTCCACACCTTGCTGACCCAGTCTATGGAGCGGGGAGATACCTAT
GTTGAAGCTCGTGATTTACTCAAGCATACCATCGAGCTCTTAGAAAGCTCACGCCAAGTGGAGCTGGCCCCTAGTCTAGT
CGCTGATGAGCTGGCTCATCTGATTGAGGAAGATAAGGTCCAGAATGTAGAGACCAAGATCTTTGAAAACAGCCTCTTCT
TTGCTGAAGAAGGAATAAAAAGTAATCTGGTCCGTCTGCTAGAAAAAGGAGAGCAAGATTCTTTCGACCAAGATAAGATT
ACTGCGGCTATCCAGCAAGTGGAGGAGAACTCCGGCATCTCCTATGACAGTATCCAAAAAGAAGCCATCCGTCAGGCTAT
CAATCAAAAGGTCTTTATCCTAACCGGCGGACCGGGAACTGGAAAAACGACCGTTATCAACTGTATCATCGCAGTCTACG
CCCAGCTTCGCGGTTTGGATCTGCGAAAGGTCAATGATCTGCCTATTCTGCTAGCAGCTCCCACTGGACGTGCTGCTCGG
CGCATGAACGAATTGACTGGTCTTCCTAGCGCCACTATCCACCGCCACTTGGGGATGACTGGCGATGATGATACCAGTCA
TTTGGATGATTATCTGGATGCTGATTTTATCATTGTGGATGAATTTTCCATGGTGGACACTTGGCTGGCTAATCAGCTGC
TCAGCAATATCTCCTCTCAGACCAAGCTCTTGATTGTCGGAGATGCGGACCAGCTGCCCTCTGTCAGTCCAGGTCAGGTA
CTGGCAGACTTACTGCAGATACCGACTATCCCACAGACCAAGCTGGAAACCATCTATCGGCAGAGCGAAGAGTCTACAAT
CGTCACACTGGCCAGCCAGATTCAGAAGGGCATTTTACCAGCAGACTTCACAGAGAAAAAAGCGGACCGTTCTTATTTTG
AAGCTAAAAATGAGCATATCCCGCCTATGATTGAGAAAATCGCTAGCGCAGCCATTCGCAGCGGCATCCCAGCTCAAGAT
GTTCAGGTATTGGCACCTATGTATCGGGGGCCAGCCGGCATTGACCAGATTAACAATCTTATGCAAAATCTCATCAATCC
TGTAGAGAAAGAGGAACTGACCTTTGAAGCTCCCGACTGTCAGTATCGCCAAGGAGACAGGGTTATCCACTTGGTCAATG
ATGCTGAAAGCAATGTCTTCAACGGTGACTTAGGCTACATCAGCGACCTGCTGCCTGCTAAGTACACCGACTCCAAGCAG
GACGAGCTAACCATTGACTTTGATGGCAATGAACTTGTTTATCAGCGTAGCGAGTGGTACAAGATTCGCCTAGCCTACGC
CATGAGCATTCACAAGTCTCAGGGCAGTGAATTTCCGGTGGTCATCTTGCCCATCACCAAGAGCAGTCATCGAATGCTGC
AGCGCAATCTCATCTACACCGCTATCACCCGCGCCAAGAGCAAGTTGATCCTACTTGGGGAAAAAGCAGCCTTTGACTAT
GCCGCAAAAAATACTGGAACCGCCCGAAAAACCTATCTAATCGAGCGCTTTGGCGACCTCCCGCAAGCTGAAACTAATAT
CCACAATCCTGTGGATAAAATGAAAGCACCTGTGGAAAACTATGTCCTGACTAAGGAAAATTTCCTGAAAATCGACCCCT
TAATCGGCCTGACCGAGGAAGATATCCACAGTATATTCAGCACATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(665-712)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-240)

AAA domain (AAA_30)

(336-526)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(577-647)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

40.696

94.797

0.386