Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ELZ47_RS09005 Genome accession   NZ_LR134002
Coordinates   1802023..1802811 (-) Length   262 a.a.
NCBI ID   WP_126435851.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797023..1807811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS08985 (NCTC10904_01759) gatA 1797446..1798912 (-) 1467 WP_126435848.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ELZ47_RS08990 (NCTC10904_01760) gatC 1798912..1799214 (-) 303 WP_002896305.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ELZ47_RS08995 (NCTC10904_01761) aspS 1799418..1801154 (-) 1737 WP_126435849.1 aspartate--tRNA ligase -
  ELZ47_RS09000 - 1801466..1802023 (-) 558 WP_126435850.1 cysteine hydrolase family protein -
  ELZ47_RS09005 (NCTC10904_01763) codY 1802023..1802811 (-) 789 WP_126435851.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ELZ47_RS09010 (NCTC10904_01764) - 1803013..1805613 (-) 2601 WP_125331192.1 SEC10/PgrA surface exclusion domain-containing protein -
  ELZ47_RS09015 (NCTC10904_01765) - 1805934..1807148 (-) 1215 WP_032906403.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29720.01 Da        Isoelectric Point: 5.0921

>NTDB_id=996728 ELZ47_RS09005 WP_126435851.1 1802023..1802811(-) (codY) [Streptococcus sanguinis strain NCTC 10904]
MANLLEKTRKITSILKRSEEQMQEELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNNDRVEAFFQDKNFPEEYV
HEANLVYETEANLPVSHDLTIFPVETKDEFPDGLTTIAPIHVSGIRLGSLIIWRNDKEFADDDLILIEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=996728 ELZ47_RS09005 WP_126435851.1 1802023..1802811(-) (codY) [Streptococcus sanguinis strain NCTC 10904]
ATGGCCAATTTACTAGAAAAAACACGAAAAATTACGTCAATTTTGAAGCGCTCAGAGGAGCAGATGCAGGAAGAGCTACC
CTACAATGCTATTACGCGTCAGTTGGCTGATATTATCCACTGCAATGCCTGCATTATCAATAGCAAGGGCCGTCTTTTAG
GCTATTTCATGCGCTATAAGACCAATAATGACCGTGTGGAAGCTTTTTTCCAGGATAAGAATTTCCCAGAGGAATACGTT
CACGAAGCCAATCTGGTCTATGAAACAGAGGCTAATCTGCCAGTTTCACATGATTTGACGATTTTCCCAGTGGAGACCAA
GGATGAGTTTCCAGACGGGCTGACAACCATTGCCCCTATCCATGTTTCAGGGATTCGTCTGGGTTCATTGATTATCTGGC
GCAATGACAAGGAATTTGCGGACGATGATCTGATTTTGATTGAGATTGCCAGCACAGTGGTAGGTATCCAGCTGCTTAAC
TTCCAGCGGGAAGAGGATGAGAAAAATATCCGCCGCCGGACAGCTGTTACAATGGCAGTCAATACTCTGTCTTACTCAGA
ACTGAGAGCTGTTTCAGCTATTCTGGGTGAGCTCAATGGCAATGAAGGCCAGCTGACAGCGTCTGTCATTGCTGATCGTA
TTGGGATTACCCGCTCAGTGATTGTCAATGCCTTGCGTAAGCTGGAAAGTGCTGGGATTATTGAAAGCCGTTCGCTGGGG
ATGAAAGGAACTTATCTAAAAGTCCTGATTCCGGATGTCTTTGATGAAATTAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

51.22

93.893

0.481