Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSQ14_RS12135 Genome accession   NZ_CP155467
Coordinates   2502252..2504648 (-) Length   798 a.a.
NCBI ID   WP_034771286.1    Uniprot ID   A0A090J2N0
Organism   Caldifermentibacillus hisashii strain FSL W8-0862     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2497252..2509648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ14_RS12115 (NSQ14_12115) - 2497345..2497614 (-) 270 WP_034771279.1 IreB family regulatory phosphoprotein -
  NSQ14_RS12120 (NSQ14_12120) alaS 2497838..2500468 (-) 2631 WP_216407749.1 alanine--tRNA ligase -
  NSQ14_RS12125 (NSQ14_12125) - 2500842..2501909 (-) 1068 WP_034771282.1 AI-2E family transporter -
  NSQ14_RS12130 (NSQ14_12130) - 2501955..2502149 (-) 195 WP_034771285.1 hypothetical protein -
  NSQ14_RS12135 (NSQ14_12135) recD2 2502252..2504648 (-) 2397 WP_034771286.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSQ14_RS12140 (NSQ14_12140) mnmA 2504932..2506056 (-) 1125 WP_269147496.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSQ14_RS12145 (NSQ14_12145) - 2506068..2507213 (-) 1146 WP_341288202.1 cysteine desulfurase family protein -
  NSQ14_RS12150 (NSQ14_12150) - 2507280..2507702 (-) 423 WP_034771297.1 cysteine metabolism transcriptional regulator CymR -
  NSQ14_RS12155 (NSQ14_12155) - 2507841..2508491 (-) 651 WP_108898335.1 YitT family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90607.63 Da        Isoelectric Point: 5.2401

>NTDB_id=996635 NSQ14_RS12135 WP_034771286.1 2502252..2504648(-) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0862]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTDHPKYGPQFQVDHFR
KDLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDTVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLSMRIYQTYKEHTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQEGHCY
LEKKTFIPTVKKLLESNQPVEIFPEEIEHELLKLEEEGKIVIDEERVFLPSIFYSEKGLVTNIKRILAQKEFEDGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRNQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKDIQVLAPMYRGPAGIDELNILLQEILNGTNKEKRRELNFGDHTYRVGDKVLQLINQPDKNIFNGDIGEIVAIFY
AKETEEKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGNHTPDIGVVKEDMSYEERLMNTDPMVGMENISPYDFMIEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=996635 NSQ14_RS12135 WP_034771286.1 2502252..2504648(-) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0862]
ATGCAACAAGAAGAACGTTATATTAAGGGCAGACCGATCGTCACCATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTGAACAAAGATGCGGTTGTCACCGGCTATTTCCCCCGTCTGTATG
AAGAGGAAACTTATATTTTTTACGGAAAGTTTACGGATCATCCAAAATATGGTCCACAATTTCAAGTTGACCATTTTCGA
AAAGATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATTTATCAAGTGAACTTTTTAAAGGAATTGGAAAGAAAACGGC
TGAAAATATTGTGGACGTTCTGGGTGAAAATGCTATCGAACGCATCATGAAACAGCCGTCTTTATTGGACACGGTACCGA
AATTGGCTGCTGATAAAGCAAAATTGTTACATGAAAAATTAATAGAGTATCAAGGGTTAGAAAATATTATGGTCGGGTTG
AATCAATACGGGTTCGGTCCGCAGCTGTCTATGCGAATCTATCAAACATATAAAGAGCATACACTGGAAATCGTCGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAATTAGGCTTTAAACTCGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAAGAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTCATTCCGACTGTTAAAAAGTTGCTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGAAAT
TGAGCATGAACTTTTGAAACTGGAGGAAGAAGGAAAGATCGTCATCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGACGGCTTTCCGGAATCAGAA
TTTCTACTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCATCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAAAGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGGGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGATGGAATGG
AACAGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCTTTGCCTGCGCATGTGCAAGTAATTTTGGTCGGTGATGAAGATCAATTACCT
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGAAACCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCTGATGTCGTAAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGATATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAGCTGAATATACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCGAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGCG
ATAAAGTTTTGCAATTAATCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATCTTTTAT
GCAAAAGAGACAGAGGAAAAAGTTGATCAACTGGTCGTTTCGTTTGACGGTAATGAGGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATTTTATGC
GGGGAAGAGGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAACGATTATT
GCAAGAAATAAACGGAAATCACACTCCGGATATCGGGGTAGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGATTGAAGATAGAGCGGAATATTTAAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)

AAA domain (AAA_30)

(336-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090J2N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.665

99.373

0.613

Multiple sequence alignment