Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GZL_RS03380 Genome accession   NZ_CP003987
Coordinates   923961..925778 (+) Length   605 a.a.
NCBI ID   WP_039629379.1    Uniprot ID   -
Organism   Streptomyces sp. 769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 918961..930778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZL_RS03370 (GZL_00802) - 920897..921931 (-) 1035 WP_039629376.1 GDP-mannose 4,6-dehydratase -
  GZL_RS03375 (GZL_00803) - 922229..923983 (+) 1755 WP_039629377.1 ABC transporter ATP-binding protein -
  GZL_RS03380 (GZL_00804) rcrQ 923961..925778 (+) 1818 WP_039629379.1 ABC transporter ATP-binding protein Regulator
  GZL_RS51060 (GZL_00805) - 925863..926600 (+) 738 WP_039629381.1 4'-phosphopantetheinyl transferase superfamily protein -
  GZL_RS03390 (GZL_00806) - 926652..926918 (+) 267 WP_229922323.1 DUF6207 family protein -
  GZL_RS48465 (GZL_00807) - 926906..927202 (-) 297 WP_159030753.1 hypothetical protein -
  GZL_RS03395 (GZL_00808) - 927319..928185 (-) 867 WP_039629385.1 dienelactone hydrolase family protein -
  GZL_RS03400 (GZL_00809) lspA 928398..928895 (-) 498 WP_239010328.1 signal peptidase II -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 64581.32 Da        Isoelectric Point: 7.1369

>NTDB_id=99663 GZL_RS03380 WP_039629379.1 923961..925778(+) (rcrQ) [Streptomyces sp. 769]
MASPDDPEEERTAPRPARRLVGLLRPHRRAVALAVLMGVGGIVLNAFGPLLLGRVTDLIAGGVLGGGPGPAPGIDFGAIG
RLLLVLLALYVVASLFMLAQGRLVASAVWRTIHELRRDAREKLTRLPLRHFDRQPAGELLSRTTNDIDNLQQTLQQTLAE
LITSIFSLLTMLALMLVISPSLAAVMLLSVPVSALIAARISKRAQPHYAAQWSANGTLNAHVEEVCTGHALIKGFDRRAA
VEERFDACNDAVYRAAAKAQFASGAMEPVMMFVANLGYVLVAVIGAGKVINGSLTLGDVQAFILYARQFSQPIVEIASVA
GRLQSGIASAQRVFTLLDAPEQAPDPHRPGTPARAEGRVEFADVSFRYSPDTPLIENLSLTVEPGSTVAIVGPTGAGKTT
LGNLLMRFYEPDSGRILLDGTDTATMTRDDLRSHFGLVLQDSWLFGGTIAENIAYGAPGACRADVEEAARATCADRFIRT
LPQGYDTVLDDESGTVSAGEKQLLTVARAFLAKPAVLVLDEATSSVDTRTEVLIQRAMHSLRAGRTSFVIAHRLSTIRDA
DLIVVMDAGRIVEQGTHDQLLRAQGLYARLHAARTHTPTAGAAAG

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=99663 GZL_RS03380 WP_039629379.1 923961..925778(+) (rcrQ) [Streptomyces sp. 769]
ATGGCCTCGCCGGACGACCCTGAGGAGGAGCGGACCGCGCCCCGGCCGGCACGTCGGCTCGTCGGCCTGCTGCGTCCGCA
CCGCCGCGCCGTGGCGCTCGCCGTGTTGATGGGCGTCGGCGGCATCGTGCTCAACGCGTTCGGCCCACTGCTGCTGGGCC
GGGTCACCGATCTGATCGCCGGCGGTGTGCTCGGCGGCGGCCCGGGCCCGGCGCCCGGGATCGACTTCGGCGCGATCGGC
CGGCTGCTGCTGGTCCTGCTGGCGCTCTACGTCGTGGCGTCGCTGTTCATGCTGGCGCAGGGCCGGCTGGTGGCGTCCGC
GGTGTGGCGCACCATCCACGAACTGCGCCGCGACGCCCGGGAGAAGCTGACCCGGCTGCCGCTGCGCCACTTCGACCGGC
AGCCGGCCGGTGAGCTGCTCAGCCGGACCACCAACGACATCGACAACCTCCAACAGACCCTCCAGCAGACCCTCGCCGAG
CTGATCACCTCGATCTTCTCGCTGCTGACGATGCTGGCGCTGATGCTGGTGATCTCGCCGTCGCTGGCCGCGGTGATGCT
GTTGAGCGTGCCCGTCTCGGCGTTGATCGCGGCCCGGATCAGCAAGCGCGCGCAGCCCCACTACGCCGCGCAGTGGTCCG
CGAACGGCACCCTCAACGCCCATGTGGAGGAGGTGTGCACCGGTCATGCGCTGATCAAGGGCTTCGACCGGCGCGCGGCG
GTCGAGGAGCGCTTCGACGCCTGCAACGACGCGGTGTACCGGGCCGCGGCCAAGGCGCAGTTCGCCTCCGGTGCCATGGA
ACCGGTCATGATGTTCGTCGCCAACCTCGGCTATGTGCTGGTGGCCGTCATCGGCGCCGGGAAGGTCATCAACGGCTCCC
TGACCCTCGGCGACGTGCAGGCGTTCATCCTCTACGCCCGCCAGTTCAGCCAGCCGATCGTGGAGATCGCCTCGGTGGCC
GGCCGGCTCCAGTCCGGCATCGCCTCCGCCCAGCGCGTCTTCACCCTGCTCGACGCCCCCGAGCAGGCCCCGGACCCGCA
CCGGCCCGGCACGCCCGCCCGTGCCGAGGGCCGCGTCGAGTTCGCCGACGTGTCCTTCCGCTACTCCCCCGACACGCCCC
TCATCGAGAACCTCTCGCTCACCGTGGAACCGGGCAGCACCGTGGCGATCGTCGGCCCGACCGGCGCCGGCAAGACCACC
CTCGGCAACCTCCTGATGCGCTTCTACGAACCGGACTCCGGCCGCATCCTCCTGGACGGCACCGACACCGCGACGATGAC
CCGCGACGACCTGCGGTCCCACTTCGGGCTGGTGCTCCAGGACAGCTGGCTGTTCGGCGGCACCATCGCGGAGAACATCG
CGTACGGCGCACCCGGGGCCTGCCGCGCGGACGTCGAGGAGGCGGCCCGCGCGACCTGCGCCGACCGCTTCATCCGCACC
CTGCCGCAGGGCTACGACACCGTGCTGGACGACGAGTCGGGCACCGTCAGCGCCGGCGAGAAGCAACTGCTGACCGTGGC
CCGGGCCTTCCTCGCCAAACCGGCCGTCCTCGTCCTGGACGAGGCCACCAGCTCCGTGGACACCCGGACCGAGGTCCTGA
TCCAACGCGCCATGCACTCCCTGCGGGCGGGCCGGACCAGCTTCGTGATCGCGCACCGCCTGTCCACGATCCGCGACGCG
GACCTGATCGTCGTGATGGACGCCGGCCGCATCGTCGAGCAGGGCACCCACGATCAACTCCTGCGCGCGCAGGGCCTGTA
CGCCCGGCTGCACGCAGCCCGCACCCACACCCCCACCGCGGGCGCCGCGGCCGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(376-524)

ABC transporter transmembrane region (ABC_membrane)

(32-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.382

94.38

0.4

Multiple sequence alignment