Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NSS91_RS12645 Genome accession   NZ_CP155466
Coordinates   2563435..2565795 (-) Length   786 a.a.
NCBI ID   WP_346207423.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0983     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2558435..2570795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS91_RS12625 (NSS91_12625) - 2559313..2559489 (-) 177 WP_192878686.1 hypothetical protein -
  NSS91_RS12630 (NSS91_12630) dtd 2559788..2560240 (-) 453 WP_342020339.1 D-aminoacyl-tRNA deacylase -
  NSS91_RS12635 (NSS91_12635) - 2560254..2562446 (-) 2193 WP_251246284.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  NSS91_RS12640 (NSS91_12640) - 2562932..2563444 (-) 513 WP_041846212.1 adenine phosphoribosyltransferase -
  NSS91_RS12645 (NSS91_12645) recJ 2563435..2565795 (-) 2361 WP_346207423.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NSS91_RS12650 (NSS91_12650) secDF 2565904..2568165 (-) 2262 WP_342020341.1 protein translocase subunit SecDF -
  NSS91_RS12655 (NSS91_12655) - 2568292..2568591 (-) 300 WP_041846209.1 post-transcriptional regulator -
  NSS91_RS12660 (NSS91_12660) spoVB 2568724..2570274 (+) 1551 WP_342020342.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89044.52 Da        Isoelectric Point: 5.8671

>NTDB_id=996587 NSS91_RS12645 WP_346207423.1 2563435..2565795(-) (recJ) [Caldifermentibacillus hisashii strain FSL W8-0983]
MLQAKTRWAVREGNRQKAEQLMNELQLTPLVANLLVNRGLDTAESVKKFLNPNEEFHHPFLLNDMDICVERIFRAIRNGE
RMVVYGDYDADGVTSTYVLLKTLRELGADADFYIPNRFTEGYGPNEKAFRTLKEAGYHLIITVDNGIAGIHEAKVAKEIG
IDLIITDHHEPGPELPDCLAIIHPKRADSNYPFKDLAGVGVAFKLVTALLGKVPEELLPFAAIGTIADLVPLKDENRLIV
KKALPLLQSSDHFGLKALMWIAGINQQELNEESISFGLAPRINAPGRLYHAGMVVDLFLANDKDEAEQLAHEINEINKER
QEIVDKITVEAIEEISQSSNYIDDQVIVVGKEGWHAGVIGIVASRLVEKFYRPVIVFSFDQATGLAKGSARSIPKFNMYQ
NLFQCKELLPHFGGHPMAAGLTMKISDVPELRERLNRLASEQLDEEDFIPVTEVDGMIPLEDIHLQSVKELLQFAPFGTE
NPKPLLLINDIQLPQIKKVGAEKNHLKAIIENHSAQLDCIGFHMGDLADEISPLSKASVIGELAINEWNHVSKPQFILKD
ICIDEWQLFDYRGNRRIDQWIHQVPEKSSKLIVFRESTVNQMNLSEFAAGLEIIHSEASAKNCDIDGMNIVLIDLPQSKK
QLESLLAGKQVARIYAHFYQDDIELLNTMPTREHFKWMYAFLHKKGVFDFRRYGAELAKYKGWSLHTIKFMLTVFFELKF
VTMDNGILSVIKNPSKRDLSESKTYQLRQEIIQLEKELLFSSYKQLKNSLDRFIGTANMKEAKAWI

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=996587 NSS91_RS12645 WP_346207423.1 2563435..2565795(-) (recJ) [Caldifermentibacillus hisashii strain FSL W8-0983]
ATGTTGCAAGCAAAGACGCGTTGGGCGGTTCGAGAAGGAAATCGTCAAAAAGCGGAACAATTAATGAATGAACTGCAGTT
GACACCTCTAGTAGCAAATTTATTAGTCAATCGAGGTTTAGATACGGCTGAAAGTGTAAAGAAATTTTTAAATCCGAATG
AAGAGTTTCACCATCCTTTTTTGCTTAATGATATGGATATATGTGTTGAACGAATTTTTCGGGCAATTCGAAATGGTGAG
CGAATGGTCGTGTATGGCGACTATGATGCCGATGGAGTAACAAGTACTTATGTATTATTGAAAACATTACGTGAACTCGG
TGCGGATGCCGATTTTTATATACCAAATCGCTTCACGGAAGGATACGGCCCAAATGAAAAAGCATTTCGAACACTGAAAG
AAGCCGGTTATCATTTAATTATCACGGTTGATAACGGAATTGCCGGGATTCATGAAGCAAAAGTGGCAAAAGAAATTGGT
ATTGATTTAATCATCACCGATCATCACGAACCCGGACCGGAACTCCCGGATTGTTTGGCGATTATTCATCCGAAGAGGGC
TGATTCCAATTACCCGTTTAAAGATTTAGCCGGTGTCGGTGTCGCGTTTAAATTGGTGACGGCTCTTTTAGGGAAAGTTC
CGGAAGAATTGCTTCCGTTTGCAGCAATCGGAACTATAGCTGATTTAGTACCTCTCAAAGATGAAAATCGCTTGATTGTA
AAAAAAGCATTACCTCTCTTACAATCGTCGGATCATTTTGGTTTAAAGGCGTTAATGTGGATTGCCGGGATCAATCAGCA
AGAATTAAATGAAGAATCAATTAGTTTTGGACTAGCCCCGCGGATAAACGCTCCCGGAAGATTATACCATGCCGGTATGG
TCGTTGATTTATTTTTGGCAAATGATAAAGATGAGGCTGAACAATTGGCCCATGAAATTAATGAAATCAATAAAGAAAGA
CAAGAAATCGTCGATAAAATAACTGTTGAAGCGATTGAGGAAATTTCTCAATCATCAAATTACATAGACGATCAGGTCAT
TGTGGTCGGTAAGGAAGGCTGGCATGCAGGGGTCATTGGCATTGTTGCTTCCAGATTAGTGGAAAAATTTTATCGGCCGG
TTATTGTTTTTTCTTTTGATCAAGCAACAGGATTGGCTAAGGGTTCGGCAAGAAGTATTCCAAAATTTAATATGTATCAA
AATTTGTTCCAATGTAAAGAACTTTTGCCGCATTTTGGCGGACACCCGATGGCTGCCGGGCTGACTATGAAAATCTCAGA
TGTTCCGGAATTAAGGGAACGGTTGAACCGGTTGGCAAGTGAACAATTAGATGAAGAGGATTTTATCCCGGTTACTGAAG
TCGATGGGATGATTCCATTGGAGGATATCCATTTGCAATCTGTTAAAGAATTGCTTCAGTTTGCCCCGTTTGGAACAGAA
AATCCAAAACCATTGCTTTTAATAAATGATATTCAATTGCCACAAATCAAAAAAGTCGGTGCAGAGAAAAATCATCTGAA
AGCAATCATTGAAAACCATTCGGCTCAACTTGATTGTATCGGTTTTCATATGGGGGATCTTGCCGATGAAATATCACCAT
TATCGAAAGCTTCGGTCATTGGAGAGTTAGCGATTAATGAATGGAATCATGTCAGTAAACCGCAGTTCATATTAAAAGAT
ATTTGTATTGATGAATGGCAATTGTTTGATTATCGAGGTAACCGAAGAATCGACCAGTGGATTCATCAAGTACCGGAAAA
AAGCAGTAAACTGATTGTTTTTCGCGAATCCACCGTCAACCAAATGAATTTATCCGAGTTCGCTGCCGGTCTTGAAATCA
TCCATTCTGAAGCCTCAGCGAAAAATTGTGATATCGACGGAATGAACATTGTTCTAATTGATTTACCCCAATCAAAAAAA
CAATTAGAGTCATTATTGGCAGGAAAGCAGGTTGCAAGAATTTATGCCCATTTTTATCAAGACGATATCGAACTCTTAAA
TACGATGCCGACAAGAGAACATTTTAAATGGATGTATGCATTCTTGCATAAAAAAGGTGTGTTTGATTTCCGGCGTTATG
GAGCCGAATTGGCGAAATATAAAGGATGGTCACTTCATACCATAAAATTTATGCTAACGGTGTTTTTTGAACTAAAATTT
GTTACAATGGATAATGGTATTCTTTCAGTTATAAAAAATCCGTCAAAACGAGATTTATCAGAATCGAAAACTTACCAATT
AAGACAGGAAATTATTCAATTGGAAAAAGAGTTGCTCTTTTCATCCTATAAACAATTAAAAAATAGTCTCGATAGATTTA
TCGGTACCGCAAATATGAAGGAGGCAAAGGCATGGATTTAG

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-768)

DHHA1 domain (DHHA1)

(308-437)

DHH family (DHH)

(82-225)

RecJ OB domain (RecJ_OB)

(454-560)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.742

98.601

0.51

Multiple sequence alignment