Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSS91_RS12560 Genome accession   NZ_CP155466
Coordinates   2544399..2546795 (-) Length   798 a.a.
NCBI ID   WP_342020329.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0983     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2539399..2551795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS91_RS12540 (NSS91_12540) - 2539491..2539760 (-) 270 WP_342020327.1 IreB family regulatory phosphoprotein -
  NSS91_RS12545 (NSS91_12545) alaS 2539984..2542614 (-) 2631 WP_346207419.1 alanine--tRNA ligase -
  NSS91_RS12550 (NSS91_12550) - 2542989..2544056 (-) 1068 WP_041903925.1 AI-2E family transporter -
  NSS91_RS12555 (NSS91_12555) - 2544102..2544296 (-) 195 WP_034771285.1 hypothetical protein -
  NSS91_RS12560 (NSS91_12560) recD2 2544399..2546795 (-) 2397 WP_342020329.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSS91_RS12565 (NSS91_12565) mnmA 2547081..2548205 (-) 1125 WP_342020330.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSS91_RS12570 (NSS91_12570) - 2548217..2549362 (-) 1146 WP_342020331.1 cysteine desulfurase family protein -
  NSS91_RS12575 (NSS91_12575) - 2549429..2549851 (-) 423 WP_041847517.1 Rrf2 family transcriptional regulator -
  NSS91_RS12580 (NSS91_12580) - 2549990..2550640 (-) 651 WP_034771299.1 YitT family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90549.55 Da        Isoelectric Point: 5.1855

>NTDB_id=996586 NSS91_RS12560 WP_342020329.1 2544399..2546795(-) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0983]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTEHPKYGPQFQVDHFQ
KDLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDTVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLSMRIYQTYKEHTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQEGHCY
LEKKTFIPAVKKLLESNQPVEIFPEDIEHELLKLEEEGKIVIDEERVFLPSIFYSEKGLVTNIKRILAQKEFEDGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPNDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRKQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKDIQVLAPMYRGPAGIDELNLLLQEILNGTNKEKRRELNFGDHTYRVGDKVLQLINQPDKNIFNGDIGEIVAIFY
AKETEEKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGNHTPDIGVVKEDMSYEERLMNTDPMVGMENISPYDFMIEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=996586 NSS91_RS12560 WP_342020329.1 2544399..2546795(-) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0983]
ATGCAACAAGAAGAACGTTATATTAAGGGGCGACCGATCGTCACCATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTAAACAAAGATGCGGTTGTCACCGGTTATTTCCCCCGTCTGTATG
AAGAGGAAACATATATTTTTTACGGAAAGTTTACGGAACATCCAAAATATGGCCCACAATTTCAAGTTGACCATTTTCAA
AAAGATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATCTATCAAGTGAACTTTTTAAAGGAATTGGAAAGAAAACGGC
CGAAAATATTGTGGACGTGCTGGGTGAAAATGCTATCGAACGCATTATGAAACAGCCGTCTTTATTGGACACGGTACCGA
AATTGGCTGCTGATAAAGCAAAATTGTTACATGAAAAATTAATAGAGTATCAAGGGTTAGAAAATATTATGGTCGGGTTG
AATCAATACGGATTCGGTCCACAGCTGTCTATGCGAATCTATCAAACATATAAAGAACATACACTGGAAATCGTCGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAATTAGGCTTTAAACTCGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAAGAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTCATTCCGGCTGTTAAAAAGTTGCTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGATAT
TGAGCATGAACTTTTGAAACTGGAGGAAGAAGGAAAGATCGTCATCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGACGGCTTTCCGGAATCGGAA
TTTCTCCTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCATCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAATGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGGGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGATGGAATGG
AACCGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCTTTGCCTGCGCATGTGCAAGTTATTTTGGTCGGTGATGAAGATCAATTACCT
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGAAAGCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCTGATGTCGTAAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGATATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAGCTGAATTTACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCGAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGCG
ATAAAGTTTTGCAATTAATCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATCTTTTAT
GCAAAAGAGACAGAGGAAAAAGTTGATCAACTGGTCGTTTCGTTTGACGGTAATGAGGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATATTATGC
GGGGAAGAGGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAACGATTATT
GCAAGAAATAAACGGAAATCACACTCCGGATATCGGGGTAGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGATTGAAGATAGAGCGGAATATTTAAGTTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

AAA domain (AAA_30)

(336-543)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.791

99.373

0.614

Multiple sequence alignment