Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ96_RS05710 Genome accession   NZ_CP155465
Coordinates   1169222..1170169 (+) Length   315 a.a.
NCBI ID   WP_034768949.1    Uniprot ID   A0A090ITF9
Organism   Caldifermentibacillus hisashii strain FSL K6-2851     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164222..1175169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ96_RS05690 (NSQ96_05690) - 1164845..1164952 (-) 108 WP_082025893.1 YjcZ family sporulation protein -
  NSQ96_RS05695 (NSQ96_05695) - 1165256..1166035 (-) 780 WP_346200708.1 MerR family transcriptional regulator -
  NSQ96_RS05700 (NSQ96_05700) - 1166762..1167796 (-) 1035 WP_342019915.1 NADH:flavin oxidoreductase/NADH oxidase -
  NSQ96_RS05705 (NSQ96_05705) - 1168166..1168915 (+) 750 WP_051989024.1 EAL domain-containing protein -
  NSQ96_RS05710 (NSQ96_05710) ceuB 1169222..1170169 (+) 948 WP_034768949.1 ABC transporter permease Machinery gene
  NSQ96_RS05715 (NSQ96_05715) - 1170166..1171116 (+) 951 WP_034768950.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ96_RS05720 (NSQ96_05720) - 1171110..1171868 (+) 759 WP_034768951.1 ABC transporter ATP-binding protein -
  NSQ96_RS05725 (NSQ96_05725) - 1172068..1173033 (+) 966 WP_251241174.1 siderophore ABC transporter substrate-binding protein -
  NSQ96_RS05730 (NSQ96_05730) - 1173302..1174363 (+) 1062 WP_346200709.1 C45 family peptidase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34552.73 Da        Isoelectric Point: 10.0987

>NTDB_id=996520 NSQ96_RS05710 WP_034768949.1 1169222..1170169(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-2851]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILVAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKGLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=996520 NSQ96_RS05710 WP_034768949.1 1169222..1170169(+) (ceuB) [Caldifermentibacillus hisashii strain FSL K6-2851]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCACTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATCAGTATTATTG
TCTCGGGGGCATCGCTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGTCGAAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCGTTGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTATGAATTAATTTTTATTAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAGGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCGTTTTTGGGCCTTATTATTCCAAATGTTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATTCTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090ITF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.341

98.73

0.537

Multiple sequence alignment