Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAFX13_RS10105 Genome accession   NZ_CP155084
Coordinates   321340..322065 (-) Length   241 a.a.
NCBI ID   WP_029831092.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316340..327065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS10080 (AAFX13_10080) - 317460..317951 (+) 492 WP_005458943.1 type II secretion system protein M -
  AAFX13_RS10085 (AAFX13_10085) - 317953..318714 (+) 762 WP_020904372.1 type II secretion system protein N -
  AAFX13_RS10090 (AAFX13_10090) cysQ 319000..319827 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AAFX13_RS10095 (AAFX13_10095) nudE 319868..320437 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  AAFX13_RS10100 (AAFX13_10100) nfuA 320658..321242 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  AAFX13_RS10105 (AAFX13_10105) comF 321340..322065 (-) 726 WP_029831092.1 amidophosphoribosyltransferase Machinery gene
  AAFX13_RS10110 (AAFX13_10110) bioH 322150..322917 (+) 768 WP_031815826.1 pimeloyl-ACP methyl ester esterase BioH -
  AAFX13_RS10115 (AAFX13_10115) - 323041..323505 (+) 465 WP_005459035.1 hypothetical protein -
  AAFX13_RS10120 (AAFX13_10120) - 323641..325962 (-) 2322 WP_069533334.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27687.82 Da        Isoelectric Point: 8.8474

>NTDB_id=996190 AAFX13_RS10105 WP_029831092.1 321340..322065(-) (comF) [Vibrio parahaemolyticus strain TBV028]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=996190 AAFX13_RS10105 WP_029831092.1 321340..322065(-) (comF) [Vibrio parahaemolyticus strain TBV028]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCTGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.614

100

0.726
  comF Vibrio cholerae strain A1552

48.319

98.755

0.477

Multiple sequence alignment