Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SNUCP_RS14850 Genome accession   NZ_AP027094
Coordinates   3202608..3203993 (-) Length   461 a.a.
NCBI ID   WP_003459312.1    Uniprot ID   -
Organism   Clostridium perfringens A strain SNU20021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3197608..3208993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNUCP_RS14830 (SNUCP_28890) ispD 3198980..3199657 (-) 678 WP_003459324.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  SNUCP_RS14835 (SNUCP_28900) - 3199671..3200777 (-) 1107 WP_003459365.1 PIN/TRAM domain-containing protein -
  SNUCP_RS14840 (SNUCP_28910) - 3201089..3201490 (+) 402 WP_003459340.1 hypothetical protein -
  SNUCP_RS14845 (SNUCP_28920) disA 3201524..3202588 (-) 1065 WP_003452233.1 DNA integrity scanning diadenylate cyclase DisA -
  SNUCP_RS14850 (SNUCP_28930) radA 3202608..3203993 (-) 1386 WP_003459312.1 DNA repair protein RadA Machinery gene
  SNUCP_RS14855 (SNUCP_28940) nagB 3204220..3204948 (-) 729 WP_003459367.1 glucosamine-6-phosphate deaminase -
  SNUCP_RS14860 (SNUCP_28950) - 3204945..3205667 (-) 723 WP_003459300.1 GntR family transcriptional regulator -
  SNUCP_RS14865 (SNUCP_28960) - 3205867..3206031 (+) 165 WP_003459343.1 hypothetical protein -
  SNUCP_RS14870 (SNUCP_28970) - 3206125..3206352 (+) 228 WP_003452255.1 glutaredoxin family protein -
  SNUCP_RS14875 (SNUCP_28980) - 3206474..3207922 (-) 1449 WP_003459369.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  SNUCP_RS14880 (SNUCP_28990) - 3207939..3208172 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50692.67 Da        Isoelectric Point: 7.9111

>NTDB_id=99558 SNUCP_RS14850 WP_003459312.1 3202608..3203993(-) (radA) [Clostridium perfringens A strain SNU20021]
MKKYGVGKVAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDT
GIGELNRVLGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETN
LDVIEAYIDKLEPAFIIIDSIQTIYREIVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVD
TVLSFEGERTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLA
SETKAVMPRRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVV
GEVGLTGEIRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=99558 SNUCP_RS14850 WP_003459312.1 3202608..3203993(-) (radA) [Clostridium perfringens A strain SNU20021]
ATGAAGAAATATGGAGTTGGTAAAGTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAA
ATGGATGGGAAAATGTCCAGAATGTAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTT
CTCCTAAGGTTGAAAGACAAATTGGTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACT
GGAATTGGTGAATTAAATAGAGTATTAGGTGGAGGACTTGTTAAGGGGTCGCTTACACTTATATCTGGTGACCCTGGAAT
AGGTAAATCTACACTTCTTTTACAAACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAG
AATCAGAAGAACAAATAAAAATAAGAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAAT
CTTGATGTAATAGAAGCATATATAGATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGA
AATAGTTTCTTCAGCACCAGGAAGTGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAA
ATATTCCTTTATTTATAGTTGCTCACGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGAT
ACCGTATTATCCTTTGAAGGGGAAAGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGC
TGAAATAGGTGTTTTTGAAATGCGTGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTCTTAGAGGACACTA
GTTTTAATCAAGAAGGGTCAGTTGTAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCA
TCTGAAACAAAAGCAGTTATGCCTAGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATT
AGAAAAAAAATTAAGAGTTCCTTTTTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTA
CAGCAGACTTAGGAATTGCTATTTCACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGCTTAGAAAAATTAGTTGTTGTA
GGCGAGGTTGGGTTAACAGGTGAAATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATT
TTTAAATGCAGTTGTTCCTTATAGAAGTTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAA
GGGAAGCAATAGGAAAGATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(78-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.89

98.265

0.49
  radA Streptococcus pneumoniae Rx1

47.357

98.482

0.466
  radA Streptococcus pneumoniae D39

47.357

98.482

0.466
  radA Streptococcus pneumoniae R6

47.357

98.482

0.466
  radA Streptococcus pneumoniae TIGR4

47.357

98.482

0.466
  radA Streptococcus mitis SK321

47.137

98.482

0.464
  radA Streptococcus mitis NCTC 12261

47.137

98.482

0.464

Multiple sequence alignment