Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAVB50_RS14945 Genome accession   NZ_CP154923
Coordinates   2795249..2796028 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain FUA2233     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2790249..2801028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS14915 (AAVB50_14910) fliH 2790267..2791019 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  AAVB50_RS14920 (AAVB50_14915) fliG 2791012..2792028 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  AAVB50_RS14925 (AAVB50_14920) fliF 2792041..2793651 (-) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  AAVB50_RS14930 (AAVB50_14925) fliE 2793697..2794017 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  AAVB50_RS14935 (AAVB50_14930) flgC 2794028..2794480 (-) 453 WP_021479294.1 flagellar basal body rod protein FlgC -
  AAVB50_RS14940 (AAVB50_14935) flgB 2794480..2794869 (-) 390 WP_345806356.1 flagellar basal body rod protein FlgB -
  AAVB50_RS14945 (AAVB50_14940) codY 2795249..2796028 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAVB50_RS14950 (AAVB50_14945) hslU 2796068..2797480 (-) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  AAVB50_RS14955 (AAVB50_14950) clpQ 2797488..2798033 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  AAVB50_RS14960 (AAVB50_14955) xerC 2798046..2798960 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  AAVB50_RS14965 (AAVB50_14960) trmFO 2799028..2800335 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=995546 AAVB50_RS14945 WP_003220850.1 2795249..2796028(-) (codY) [Bacillus subtilis strain FUA2233]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=995546 AAVB50_RS14945 WP_003220850.1 2795249..2796028(-) (codY) [Bacillus subtilis strain FUA2233]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGACCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment