Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAVC46_RS03415 Genome accession   NZ_CP154913
Coordinates   653239..654018 (+) Length   259 a.a.
NCBI ID   WP_034662375.1    Uniprot ID   A0AAE3WK82
Organism   Bacillus pumilus strain FUA2119     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 648239..659018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS03395 (AAVC46_03395) trmFO 648943..650247 (+) 1305 WP_345821438.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAVC46_RS03400 (AAVC46_03400) xerC 650310..651227 (+) 918 WP_060596252.1 tyrosine recombinase XerC -
  AAVC46_RS03405 (AAVC46_03405) hslV 651242..651787 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  AAVC46_RS03410 (AAVC46_03410) hslU 651804..653204 (+) 1401 WP_095285167.1 HslU--HslV peptidase ATPase subunit -
  AAVC46_RS03415 (AAVC46_03415) codY 653239..654018 (+) 780 WP_034662375.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAVC46_RS03420 (AAVC46_03420) flgB 654305..654694 (+) 390 WP_034623641.1 flagellar basal body rod protein FlgB -
  AAVC46_RS03425 (AAVC46_03425) flgC 654694..655146 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  AAVC46_RS03430 (AAVC46_03430) fliE 655158..655475 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  AAVC46_RS03435 (AAVC46_03435) fliF 655525..657117 (+) 1593 WP_307499616.1 flagellar basal-body MS-ring/collar protein FliF -
  AAVC46_RS03440 (AAVC46_03440) fliG 657129..658145 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  AAVC46_RS03445 (AAVC46_03445) fliH 658138..658902 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29019.22 Da        Isoelectric Point: 4.5971

>NTDB_id=995299 AAVC46_RS03415 WP_034662375.1 653239..654018(+) (codY) [Bacillus pumilus strain FUA2119]
MALLQKTRIINSMLQDSAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKGE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=995299 AAVC46_RS03415 WP_034662375.1 653239..654018(+) (codY) [Bacillus pumilus strain FUA2119]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATTCAGCAGGGAAACCAGTTAATTTTAAAGAAAT
GGCGGAAACACTGAGAGATGTCATTGATTCAAACATTTTTGTGTTGAGTAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCAATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACAATTGTCCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCACTGACGATGATTTAATACTTGCTGAGTACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAAAAAGGAGAA
GAAATCGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTCCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475

Multiple sequence alignment