Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAYR27_RS15580 Genome accession   NZ_CP154912
Coordinates   3034930..3035709 (-) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain FUA2118     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3029930..3040709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS15550 (AAYR27_15550) fliH 3030044..3030808 (-) 765 WP_251232135.1 flagellar assembly protein FliH -
  AAYR27_RS15555 (AAYR27_15555) fliG 3030801..3031817 (-) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  AAYR27_RS15560 (AAYR27_15560) fliF 3031829..3033421 (-) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  AAYR27_RS15565 (AAYR27_15565) fliE 3033471..3033788 (-) 318 WP_034281774.1 flagellar hook-basal body complex protein FliE -
  AAYR27_RS15570 (AAYR27_15570) flgC 3033800..3034252 (-) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  AAYR27_RS15575 (AAYR27_15575) flgB 3034252..3034641 (-) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  AAYR27_RS15580 (AAYR27_15580) codY 3034930..3035709 (-) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAYR27_RS15585 (AAYR27_15585) hslU 3035744..3037144 (-) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  AAYR27_RS15590 (AAYR27_15590) hslV 3037161..3037706 (-) 546 WP_034281773.1 ATP-dependent protease subunit HslV -
  AAYR27_RS15595 (AAYR27_15595) xerC 3037721..3038638 (-) 918 WP_034281771.1 tyrosine recombinase XerC -
  AAYR27_RS15600 (AAYR27_15600) trmFO 3038701..3040005 (-) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=995260 AAYR27_RS15580 WP_007499612.1 3034930..3035709(-) (codY) [Bacillus safensis strain FUA2118]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=995260 AAYR27_RS15580 WP_007499612.1 3034930..3035709(-) (codY) [Bacillus safensis strain FUA2118]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAGCAGATCGAAAATGCACGTATGAAAAAAATGCTAGAAGATCGTCAGTTCCCTGAGGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGCTTAACAACAATTGTCCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGATCGTGTAGGGATTACGC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment