Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HAS68_RS01960 Genome accession   NZ_CP002007
Coordinates   362952..363740 (+) Length   262 a.a.
NCBI ID   WP_009909355.1    Uniprot ID   -
Organism   Streptococcus suis 05HAS68     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 357952..368740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAS68_RS01935 (HAS68_0321) - 358250..359209 (-) 960 WP_014636805.1 asparaginase -
  HAS68_RS11670 - 359279..360644 (+) 1366 Protein_337 Cof-type HAD-IIB family hydrolase -
  HAS68_RS01950 (HAS68_0324) - 360660..361112 (-) 453 WP_004194294.1 universal stress protein -
  HAS68_RS01955 (HAS68_0325) - 361267..362481 (+) 1215 WP_002937606.1 pyridoxal phosphate-dependent aminotransferase -
  HAS68_RS01960 (HAS68_0326) codY 362952..363740 (+) 789 WP_009909355.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HAS68_RS01965 (HAS68_0327) - 363742..364293 (+) 552 WP_009909357.1 isochorismatase family cysteine hydrolase -
  HAS68_RS01970 - 364576..365764 (+) 1189 Protein_342 IS110 family transposase -
  HAS68_RS01975 (HAS68_0330) rplS 366322..366669 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  HAS68_RS01980 (HAS68_0331) - 366851..367525 (+) 675 WP_013730145.1 hydrolase -
  HAS68_RS01985 (HAS68_0332) gatC 367743..368045 (+) 303 WP_002939046.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29210.28 Da        Isoelectric Point: 4.6078

>NTDB_id=99519 HAS68_RS01960 WP_009909355.1 362952..363740(+) (codY) [Streptococcus suis 05HAS68]
MTTLLEKTRNITSILKCSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=99519 HAS68_RS01960 WP_009909355.1 362952..363740(+) (codY) [Streptococcus suis 05HAS68]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGTGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489

Multiple sequence alignment