Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAVD42_RS19615 Genome accession   NZ_CP154908
Coordinates   3640772..3641551 (+) Length   259 a.a.
NCBI ID   WP_268497833.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3635772..3646551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS19595 (AAVD42_19595) trmFO 3636476..3637780 (+) 1305 WP_345807443.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAVD42_RS19600 (AAVD42_19600) xerC 3637843..3638760 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  AAVD42_RS19605 (AAVD42_19605) hslV 3638775..3639320 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  AAVD42_RS19610 (AAVD42_19610) hslU 3639337..3640737 (+) 1401 WP_106067465.1 HslU--HslV peptidase ATPase subunit -
  AAVD42_RS19615 (AAVD42_19615) codY 3640772..3641551 (+) 780 WP_268497833.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAVD42_RS19620 (AAVD42_19620) flgB 3641838..3642227 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  AAVD42_RS19625 (AAVD42_19625) flgC 3642227..3642679 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  AAVD42_RS19630 (AAVD42_19630) fliE 3642691..3643008 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  AAVD42_RS19635 (AAVD42_19635) fliF 3643058..3644650 (+) 1593 WP_113767666.1 flagellar basal-body MS-ring/collar protein FliF -
  AAVD42_RS19640 (AAVD42_19640) fliG 3644662..3645678 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  AAVD42_RS19645 (AAVD42_19645) fliH 3645671..3646435 (+) 765 WP_345807444.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29076.31 Da        Isoelectric Point: 4.6614

>NTDB_id=995155 AAVD42_RS19615 WP_268497833.1 3640772..3641551(+) (codY) [Bacillus pumilus strain FUA2116]
MALLQKTRIINSMLQDSAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=995155 AAVD42_RS19615 WP_268497833.1 3640772..3641551(+) (codY) [Bacillus pumilus strain FUA2116]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATTCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAACAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCCATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGACTTCTAGTGGCGAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTTATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.981

100

0.95
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment