Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAVC22_RS19890 Genome accession   NZ_CP154902
Coordinates   3918060..3919790 (+) Length   576 a.a.
NCBI ID   WP_025811171.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FUA2150     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3913060..3924790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC22_RS19865 (AAVC22_19870) - 3913299..3913559 (+) 261 WP_023855168.1 exodeoxyribonuclease VII small subunit -
  AAVC22_RS19870 (AAVC22_19875) - 3913549..3914439 (+) 891 WP_023855167.1 polyprenyl synthetase family protein -
  AAVC22_RS19875 (AAVC22_19880) dxs 3914672..3916573 (+) 1902 WP_023855166.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAVC22_RS19880 (AAVC22_19885) - 3916570..3917415 (+) 846 WP_020452130.1 TlyA family RNA methyltransferase -
  AAVC22_RS19885 (AAVC22_19890) argR 3917579..3918028 (+) 450 WP_020452129.1 transcriptional regulator ArgR -
  AAVC22_RS19890 (AAVC22_19895) recN 3918060..3919790 (+) 1731 WP_025811171.1 DNA repair protein RecN Machinery gene
  AAVC22_RS19895 (AAVC22_19900) spoIVB 3919939..3921255 (+) 1317 WP_043054395.1 SpoIVB peptidase -
  AAVC22_RS19900 (AAVC22_19905) spo0A 3921545..3922345 (+) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  AAVC22_RS19905 (AAVC22_19910) - 3922687..3922983 (+) 297 WP_020452126.1 antimicrobial peptide LCI -
  AAVC22_RS19910 (AAVC22_19915) - 3923098..3923670 (+) 573 WP_232513482.1 serine acetyltransferase -
  AAVC22_RS19915 (AAVC22_19920) - 3924162..3924467 (+) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64576.44 Da        Isoelectric Point: 4.8363

>NTDB_id=995035 AAVC22_RS19890 WP_025811171.1 3918060..3919790(+) (recN) [Bacillus paralicheniformis strain FUA2150]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIEHALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLTKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=995035 AAVC22_RS19890 WP_025811171.1 3918060..3919790(+) (recN) [Bacillus paralicheniformis strain FUA2150]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACCGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGAGCCGAATTGGAAGGGCTTTTCCTCCTTGACAGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAACTCGGGATTGAAGCCTCGGATGACATGATCGTTATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATACACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGATGAGCACCATCTTCAGCTTCTGGACAGGTTTGCAGGAGAAGAAATCGAGCATGCTCTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAAAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGACTCGATTTAATACAGTTCCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAACTTCTTC
AGGAAGAGCGCCGTCAAATCGCTAATTTCGAAAAAATATACGAAGCTCTGCAAAATGCCTATAATGCGCTACGCAACGAG
CAGGCTGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCTGTAGCCAACGCATACTACATTCTCGAAGATTCAACTTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGATACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCCATGAAAAGCATTTTCTCTGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGAGTCGCGCAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCATCTTTTGATTACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CACCGTTGACAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGAGTCGAAGTAACGGATCTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.597

100

0.816

Multiple sequence alignment