Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EW033_RS06970 Genome accession   NZ_LR130515
Coordinates   1339947..1340720 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain BPH2947 isolate BPH2947     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334947..1345720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW033_RS06950 trmFO 1335291..1336598 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  EW033_RS06955 xerC 1337015..1337911 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  EW033_RS06960 hslV 1337908..1338453 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  EW033_RS06965 hslU 1338519..1339922 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  EW033_RS06970 codY 1339947..1340720 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EW033_RS06975 - 1340771..1340863 (+) 93 WP_001790530.1 hypothetical protein -
  EW033_RS06980 rpsB 1341062..1341829 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  EW033_RS06985 - 1341863..1341976 (+) 114 WP_001789890.1 hypothetical protein -
  EW033_RS06990 tsf 1342011..1342892 (+) 882 WP_000201387.1 translation elongation factor Ts -
  EW033_RS06995 pyrH 1343029..1343751 (+) 723 WP_000057330.1 UMP kinase -
  EW033_RS07000 frr 1343770..1344324 (+) 555 WP_001280006.1 ribosome recycling factor -
  EW033_RS07005 - 1344697..1345467 (+) 771 WP_000473701.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=994862 EW033_RS06970 WP_000055337.1 1339947..1340720(+) (codY) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=994862 EW033_RS06970 WP_000055337.1 1339947..1340720(+) (codY) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428