Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EW029_RS05955 Genome accession   NZ_LR130513
Coordinates   1210389..1211162 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain BPH2900 isolate BPH2900     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205389..1216162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW029_RS05935 trmFO 1205733..1207040 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  EW029_RS05940 xerC 1207457..1208353 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  EW029_RS05945 hslV 1208350..1208895 (+) 546 WP_000072678.1 ATP-dependent protease subunit HslV -
  EW029_RS05950 hslU 1208961..1210364 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  EW029_RS05955 codY 1210389..1211162 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EW029_RS05960 - 1211213..1211305 (+) 93 WP_031788481.1 hypothetical protein -
  EW029_RS05965 rpsB 1211504..1212271 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  EW029_RS05970 - 1212305..1212418 (+) 114 WP_001789890.1 hypothetical protein -
  EW029_RS05975 tsf 1212453..1213334 (+) 882 WP_000201387.1 translation elongation factor Ts -
  EW029_RS05980 pyrH 1213471..1214193 (+) 723 WP_000057330.1 UMP kinase -
  EW029_RS05985 frr 1214212..1214766 (+) 555 WP_001280005.1 ribosome recycling factor -
  EW029_RS05990 - 1215139..1215909 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=994773 EW029_RS05955 WP_000055337.1 1210389..1211162(+) (codY) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=994773 EW029_RS05955 WP_000055337.1 1210389..1211162(+) (codY) [Staphylococcus aureus strain BPH2900 isolate BPH2900]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428