Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAVB98_RS00525 Genome accession   NZ_CP154895
Coordinates   102333..103112 (-) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 97333..108112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS00495 (AAVB98_00495) fliH 97377..98132 (-) 756 WP_013352257.1 flagellar assembly protein FliH -
  AAVB98_RS00500 (AAVB98_00500) fliG 98125..99141 (-) 1017 WP_146289827.1 flagellar motor switch protein FliG -
  AAVB98_RS00505 (AAVB98_00505) fliF 99154..100764 (-) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  AAVB98_RS00510 (AAVB98_00510) fliE 100807..101127 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  AAVB98_RS00515 (AAVB98_00515) flgC 101138..101590 (-) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  AAVB98_RS00520 (AAVB98_00520) flgB 101590..101979 (-) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  AAVB98_RS00525 (AAVB98_00525) codY 102333..103112 (-) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAVB98_RS00530 (AAVB98_00530) hslU 103150..104562 (-) 1413 WP_258565086.1 HslU--HslV peptidase ATPase subunit -
  AAVB98_RS00535 (AAVB98_00535) hslV 104570..105115 (-) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  AAVB98_RS00540 (AAVB98_00540) xerC 105131..106048 (-) 918 WP_013352249.1 tyrosine recombinase XerC -
  AAVB98_RS00545 (AAVB98_00545) trmFO 106118..107425 (-) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=994743 AAVB98_RS00525 WP_013352252.1 102333..103112(-) (codY) [Bacillus amyloliquefaciens strain Fad 77]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=994743 AAVB98_RS00525 WP_013352252.1 102333..103112(-) (codY) [Bacillus amyloliquefaciens strain Fad 77]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment