Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AAVD18_RS09705 Genome accession   NZ_CP154893
Coordinates   1829712..1832069 (-) Length   785 a.a.
NCBI ID   WP_061573718.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1824712..1837069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS09685 (AAVD18_09685) - 1824793..1826346 (+) 1554 WP_014470771.1 SH3 domain-containing protein -
  AAVD18_RS09690 (AAVD18_09690) dtd 1826375..1826818 (-) 444 WP_013353029.1 D-aminoacyl-tRNA deacylase -
  AAVD18_RS09695 (AAVD18_09695) relA 1826831..1829035 (-) 2205 WP_014472139.1 GTP diphosphokinase -
  AAVD18_RS09700 (AAVD18_09700) - 1829194..1829706 (-) 513 WP_013353031.1 adenine phosphoribosyltransferase -
  AAVD18_RS09705 (AAVD18_09705) recJ 1829712..1832069 (-) 2358 WP_061573718.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AAVD18_RS09710 (AAVD18_09710) - 1832125..1832451 (-) 327 WP_013353033.1 lipopolysaccharide assembly LapA domain-containing protein -
  AAVD18_RS09715 (AAVD18_09715) - 1832515..1833012 (-) 498 WP_013353034.1 cation:proton antiporter regulatory subunit -
  AAVD18_RS09720 (AAVD18_09720) secDF 1833143..1835362 (-) 2220 WP_013353035.1 protein translocase subunit SecDF -
  AAVD18_RS09725 (AAVD18_09725) - 1835399..1835695 (-) 297 WP_013353036.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87325.90 Da        Isoelectric Point: 5.1197

>NTDB_id=994706 AAVD18_RS09705 WP_061573718.1 1829712..1832069(-) (recJ) [Bacillus amyloliquefaciens strain Fad 11/2]
MLASKMRWEIQQPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFYDPYELKGMREAVDRIKLAVSRG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTDDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQGGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGMDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTKEDFIPVQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDSAALDCVGFNKGELEAGIVPGSTISIVGEMSINEWNNRKKPQLMIKDA
AVPEWQLFDIRGKRMWEDTVTALPKEKRVLISFNEKTARKLRAELSGELAEITSESEAEALPLDGKYAVFLDVPPSADRL
QRLLDGKKPERIYFVFINHEEHFLSTFPSRNDFKWFYAFLLKRGTFNLGKHGSELARHRGWSIDTINFMTKVFFDLGFVK
IEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=994706 AAVD18_RS09705 WP_061573718.1 1829712..1832069(-) (recJ) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATAAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGTGCAAGGCTGTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGAATTAAAGGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCCCGCGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCAGTGATGCTGACGGCGCTCAGACAGCT
GTCAGCGAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGATTTTCGCTCATCATTACAGTGGATACGGGTATCGCCGCCGTTCATGAAGCCGAAGTCGCAAAAGAGCTC
GGTTTAGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGACGTATTTGCGATTATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACTTGGCGGCGATCGGTACGGTTGCTGATCTGGTGCCGCTGCATGATGAAAACAGATTAATA
GCGTCGCTTGGAATCGAAAGGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGAGATAT
CGGACAAGCCGATGAGGAAACGATCGGGTTTCAGGTCGCACCGAGGCTGAATGCCGTCGGAAGAATAGAACAGGCTGATC
CCGCGGTGCACCTGTTGATGACCGATGACCAGTTTGAAGCGGAGGAGCTGGCTTCGGATATTGACCGGCTGAATAAAGAG
CGGCAGAAAATGGTGAAAACCATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGGCGGAAACCCTTCTGCCATTGT
CGTGGCAAAAGCCGGCTGGAATCCGGGAGTTGTCGGTATTGTCGCATCGAAGCTGGCTGAACGCTTTTACCGGCCCGCTG
TTGTGCTGGGGATGGATGAGGAGCAGGGAATCGCCAAAGGGTCGGCGCGAAGCATCAGAGGCTTTAACCTTTTTACGAGC
CTGTCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGACATCCGATGGCCGCAGGAATGACTTTGAAGGCTGAAGATGT
GGCGGATTTAAGGGATCGGCTGAATCAAATGGCTGAAGAAACCCTTACCAAAGAGGATTTTATCCCCGTTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATCACCGTTGAAAGCATTACAGAATTGAATATGCTGTCGCCGTTCGGCATGCTAAAC
CCTAAACCTCATGTGATGGTGGAAAACGCCGTGCTTGATGAGGTGCGCCTGATCGGAGCAAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATTCCGCCGCTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTTGAAGCCGGGATTGTTCCCGGAT
CAACGATTTCCATTGTCGGCGAGATGTCTATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGATGCT
GCGGTGCCGGAATGGCAGCTTTTTGATATCAGGGGCAAGCGGATGTGGGAAGATACGGTCACTGCGCTGCCTAAGGAAAA
ACGGGTGCTCATCAGCTTTAACGAAAAAACCGCCCGAAAGCTCCGTGCCGAGCTTTCGGGTGAGCTGGCTGAGATCACGT
CGGAATCCGAAGCAGAAGCTCTTCCGCTTGACGGAAAGTATGCCGTTTTTCTGGATGTGCCGCCATCAGCGGACCGCCTC
CAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATTAATCATGAAGAACATTTCCTGTCCACATT
TCCATCGCGGAATGACTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCACTTTTAACTTAGGCAAGCATGGTTCAG
AGCTTGCGAGACACAGAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAA
ATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTATCAGGTAAAACA
GCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCAGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGAACC
AAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-768)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.807

100

0.819

Multiple sequence alignment