Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EW030_RS06050 Genome accession   NZ_LR130511
Coordinates   1199032..1199805 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain BPH2819 isolate BPH2819     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1194032..1204805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW030_RS06030 trmFO 1194375..1195682 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  EW030_RS06035 xerC 1196100..1196996 (+) 897 WP_001015601.1 tyrosine recombinase XerC -
  EW030_RS06040 hslV 1196993..1197538 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  EW030_RS06045 hslU 1197604..1199007 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  EW030_RS06050 codY 1199032..1199805 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EW030_RS06055 - 1199879..1199953 (+) 75 WP_031761472.1 hypothetical protein -
  EW030_RS06060 rpsB 1200152..1200919 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  EW030_RS06065 - 1200953..1201066 (+) 114 WP_001789890.1 hypothetical protein -
  EW030_RS06070 tsf 1201101..1201982 (+) 882 WP_000201392.1 translation elongation factor Ts -
  EW030_RS06075 pyrH 1202119..1202841 (+) 723 WP_000057330.1 UMP kinase -
  EW030_RS06080 frr 1202860..1203414 (+) 555 WP_001280006.1 ribosome recycling factor -
  EW030_RS06085 - 1203787..1204557 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=994684 EW030_RS06050 WP_000055337.1 1199032..1199805(+) (codY) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=994684 EW030_RS06050 WP_000055337.1 1199032..1199805(+) (codY) [Staphylococcus aureus strain BPH2819 isolate BPH2819]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment