Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   AAYT22_RS08315 Genome accession   NZ_CP154876
Coordinates   1631746..1632672 (-) Length   308 a.a.
NCBI ID   WP_001291297.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20155336     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1626746..1637672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT22_RS08295 (AAYT22_08285) treR 1627873..1628583 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AAYT22_RS08300 (AAYT22_08290) - 1628615..1629418 (-) 804 WP_000157673.1 ABC transporter ATP-binding protein -
  AAYT22_RS08305 (AAYT22_08295) - 1629431..1630308 (-) 878 Protein_1643 ABC transporter permease -
  AAYT22_RS08310 (AAYT22_08300) - 1630320..1631129 (-) 810 Protein_1644 ABC transporter substrate-binding protein -
  AAYT22_RS08315 (AAYT22_08305) amiF 1631746..1632672 (-) 927 WP_001291297.1 ATP-binding cassette domain-containing protein Regulator
  AAYT22_RS08320 (AAYT22_08310) amiE 1632683..1633750 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  AAYT22_RS08325 (AAYT22_08315) amiD 1633759..1634685 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator
  AAYT22_RS08330 (AAYT22_08320) amiC 1634685..1636181 (-) 1497 WP_000759902.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34822.89 Da        Isoelectric Point: 6.6224

>NTDB_id=994385 AAYT22_RS08315 WP_001291297.1 1631746..1632672(-) (amiF) [Streptococcus pneumoniae strain 20155336]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAPELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=994385 AAYT22_RS08315 WP_001291297.1 1631746..1632672(-) (amiF) [Streptococcus pneumoniae strain 20155336]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTCCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.574

99.026

0.847
  amiF Streptococcus thermophilus LMD-9

85.246

99.026

0.844

Multiple sequence alignment