Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   H702_RS02930 Genome accession   NZ_AUZH01000012
Coordinates   128022..128807 (+) Length   261 a.a.
NCBI ID   WP_006532961.1    Uniprot ID   A0AB33ANX2
Organism   Streptococcus equinus JB1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 123022..133807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H702_RS02915 (H702_03015) - 124026..124478 (-) 453 WP_039696345.1 universal stress protein -
  H702_RS02920 (H702_03020) - 124798..126564 (+) 1767 WP_039696346.1 glycerophosphodiester phosphodiesterase -
  H702_RS02925 (H702_03025) - 126601..127815 (+) 1215 WP_039696347.1 pyridoxal phosphate-dependent aminotransferase -
  H702_RS02930 (H702_03030) codY 128022..128807 (+) 786 WP_006532961.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  H702_RS02935 (H702_03035) - 128807..129355 (+) 549 WP_004233137.1 cysteine hydrolase family protein -
  H702_RS02940 (H702_03040) gatC 129532..129834 (+) 303 WP_004233135.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  H702_RS02945 (H702_03045) gatA 129834..131300 (+) 1467 WP_039696348.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  H702_RS02950 (H702_03050) gatB 131300..132742 (+) 1443 WP_039696349.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28836.91 Da        Isoelectric Point: 4.3995

>NTDB_id=99412 H702_RS02930 WP_006532961.1 128022..128807(+) (codY) [Streptococcus equinus JB1]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNSCIINGGGTLLGYAMKYKTNTDRVEEFFQAKQFPESYV
KAASRVYDTEANLSVDNDLTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDEEFSEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=99412 H702_RS02930 WP_006532961.1 128022..128807(+) (codY) [Streptococcus equinus JB1]
ATGCCGAATTTATTAGAAAAAACACGTAAGATTACATCAATTTTGCAACGCTCTGTTGACAGCCTAGATACTGAATTGCC
ATATAACACAATGGCCGCTCAACTTGCTGACATTATTGATTGTAACTCTTGCATCATCAATGGGGGAGGAACCCTTCTTG
GTTATGCAATGAAATACAAAACTAATACTGACCGTGTTGAGGAATTCTTTCAAGCAAAACAATTCCCAGAAAGTTATGTA
AAAGCAGCTAGTCGTGTTTACGATACTGAAGCTAACTTGTCTGTAGATAATGATTTGACAATTTTCCCAGTTGAATCAAA
AGATATCTATCCTGATGGATTGACAACAATCGCCCCAATTTATGGTGGTGGTATGCGCCTTGGTTCTCTTATCATCTGGC
GTAACGATGAAGAATTCTCAGAAGACGATTTAATCCTTGTTGAAATCGCCTCTACAGTAGTTGGTATTCAATTGCTTAAT
CTTCAAACTGAAAATCTTGAAGAAACAATCCGTAAACAAACAGCCGTTAACATGGCTATCAACACACTTTCATATTCTGA
AATGAAAGCTGTATCTGCTATTTTGGGTGAATTGGACGGAACTGAAGGTCGCTTGACTGCGTCAGTTATCGCTGACCGTA
TCGGTATCACACGTTCAGTTATCGTTAATGCCCTTCGTAAATTGGAATCAGCAGGTATCATCGAAAGCCGTTCATTGGGT
ATGAAAGGTACATACCTTAAAGTCATCAATGAAGGTATCTTCGACAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33ANX2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.517

100

0.655
  codY Bacillus subtilis subsp. subtilis str. 168

51.822

94.636

0.49