Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   H702_RS02630 Genome accession   NZ_AUZH01000012
Coordinates   62641..65103 (-) Length   820 a.a.
NCBI ID   WP_039696299.1    Uniprot ID   A0A091BV81
Organism   Streptococcus equinus JB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57641..70103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H702_RS02610 (H702_02705) - 57699..58136 (-) 438 WP_039696294.1 GNAT family N-acetyltransferase -
  H702_RS02615 (H702_02710) pflB 58197..60521 (-) 2325 WP_039696295.1 formate C-acetyltransferase -
  H702_RS02620 (H702_02715) dinB 60738..61829 (+) 1092 WP_039696297.1 DNA polymerase IV -
  H702_RS02625 (H702_02720) - 61885..62385 (-) 501 WP_039696298.1 hypothetical protein -
  H702_RS02630 (H702_02725) recD/recD2/recDB 62641..65103 (-) 2463 WP_039696299.1 SF1B family DNA helicase RecD2 Machinery gene
  H702_RS02635 (H702_02730) lepB 65215..65808 (-) 594 WP_039696300.1 signal peptidase I -
  H702_RS02640 (H702_02735) rnhC 65825..66724 (-) 900 WP_039696302.1 ribonuclease HIII -
  H702_RS02645 (H702_02740) zapA 66844..67152 (+) 309 WP_039696304.1 cell division protein ZapA -
  H702_RS02650 (H702_02745) - 67156..67704 (+) 549 WP_039696306.1 CvpA family protein -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 92165.20 Da        Isoelectric Point: 4.4197

>NTDB_id=99406 H702_RS02630 WP_039696299.1 62641..65103(-) (recD/recD2/recDB) [Streptococcus equinus JB1]
MEYFFSGTIDRIIFENASNFFKIILLEIEDTDSDFDDFEIIVTGTIADVIEGENYTFWGELTQHPKYGEQLKVTRYERTK
PTSSGLIKYFSSDHFKGIGKKTAEKIVQLYGDNTIDKILEDPSKLESISGLSKENRDNFVVKLKLNYGTEQILSKLAEFG
LTNRVAIDIFNHYKEESLEIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADAPQRFRAALVHSLFETSVENGDTYVEAR
DLLENAITILEEARQIELDPAAVAKELSTLIAEDKVQNIGTKIFDNTLFYAEAGIKKNLTRILDTPLTKQFSDQDLQEEI
ENIEDTFGISYDAVQKNAIKEALQSKVFILTGGPGTGKTTVINGLIAAYADLHGIDLEKKDIPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIKTLPQIALTKIFRQSEDSTIVTLANQMRQGVLPADFTQKKADRSYFEAGAQYIPEMIPKIVSAAIKSGISPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLGDQLSFAFGDMNFRKGDKVLHLINDAELNVFNGDIGYITDLIPAKYTESKQDELYLS
FDGTEVIYPRNEWHKITLAYAMSIHKSQGSEFQVVILPITRQSRRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
SKRKTYLVQRFTANPEDLDNSEAIENLDETKETQNEPDKACSSTAHVEEEKSEKVVQLSLDFDEDKPDNVKEYRLTEENL
PFIDPMIGITQEDIEQFFKK

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=99406 H702_RS02630 WP_039696299.1 62641..65103(-) (recD/recD2/recDB) [Streptococcus equinus JB1]
ATGGAATACTTCTTTTCTGGCACTATTGACCGTATTATTTTTGAAAATGCCAGTAACTTCTTTAAAATCATATTACTCGA
AATCGAAGATACCGATTCTGACTTTGATGATTTTGAAATCATTGTCACAGGAACCATTGCTGATGTCATCGAAGGCGAAA
ATTACACCTTCTGGGGAGAATTAACCCAGCATCCAAAATATGGTGAGCAGCTCAAAGTTACCCGATACGAGCGAACAAAA
CCAACATCTTCTGGACTCATCAAATACTTTTCAAGCGACCACTTTAAAGGTATCGGTAAAAAGACAGCTGAGAAAATTGT
CCAACTCTACGGCGATAACACGATTGATAAAATTCTAGAAGACCCAAGTAAGCTCGAGAGCATTTCAGGACTCTCTAAAG
AAAATCGTGACAATTTTGTTGTCAAATTAAAACTTAACTACGGTACTGAGCAAATTCTCTCAAAACTAGCTGAATTTGGT
TTAACTAATCGCGTAGCCATCGACATTTTCAATCATTATAAGGAAGAAAGTTTAGAAATTATCCAAGAAAATCCTTATCA
ACTGGTCGAAGATATTCAGGGTATCGGCTTTAAAATTGCAGACCAGCTCGCTGAACAATTGGGCATTGAGGCAGATGCAC
CGCAGCGTTTTCGTGCCGCACTCGTTCACAGCTTATTTGAAACATCGGTTGAAAATGGGGATACTTACGTTGAAGCGCGT
GATTTACTAGAAAATGCTATTACCATTTTGGAAGAAGCTCGCCAAATTGAGCTAGACCCTGCTGCTGTTGCTAAGGAATT
ATCTACGCTTATCGCCGAAGACAAGGTGCAAAATATCGGCACAAAAATCTTTGATAACACACTGTTTTATGCCGAAGCTG
GCATCAAGAAAAATCTAACACGCATCCTTGACACTCCATTAACTAAACAATTTTCAGACCAAGATTTACAAGAAGAAATT
GAAAACATCGAAGACACCTTTGGCATTTCTTATGACGCTGTCCAAAAAAATGCCATCAAAGAAGCTCTTCAAAGCAAAGT
TTTCATTCTAACTGGTGGACCAGGAACTGGTAAAACAACCGTTATTAACGGTTTGATTGCTGCTTATGCTGATTTACATG
GCATTGATTTAGAGAAAAAAGATATCCCAATTGTTCTTGCTGCGCCAACTGGCCGCGCGGCACGTCGCATGAACGAATTA
ACTGGACTTCCAAGTGCAACCATTCACCGCCATCTTGGTTTAAACGGTGATAATGACTATCAAGCCATGGATGATTATTT
GGACTGCGATTTGATTATCATTGATGAATTTTCAATGGTGGATACTTGGCTGGCTAATCAGCTCTTTAGCTCCATTTCAT
CAAATACCCAAGTCATTATCGTTGGAGATAGTGACCAACTTCCATCTGTTGGACCTGGGCAAGTGCTAGCTGATTTACTC
AAAATCAAAACACTGCCACAAATAGCACTGACAAAAATCTTTAGGCAATCTGAAGACTCAACCATTGTCACACTGGCTAA
TCAGATGAGACAAGGCGTCTTGCCAGCTGATTTTACCCAGAAAAAAGCTGACCGTTCTTACTTTGAAGCTGGCGCTCAGT
ACATTCCTGAAATGATTCCAAAAATTGTCAGCGCAGCTATTAAAAGTGGCATCAGCCCTCAAGAAATTCAAATTCTAGCG
CCTATGTACCGTGGTGCTGCTGGCATTAACCGCCTCAATACAATCATTCAAGATTTGCTTAATCCACTCGGTGACCAATT
ATCATTTGCCTTTGGTGATATGAATTTCCGTAAAGGGGACAAAGTTCTTCATTTGATTAATGATGCCGAGCTCAATGTCT
TTAATGGAGATATTGGCTATATCACAGACTTGATTCCAGCCAAATACACAGAATCAAAACAAGATGAACTCTACTTGTCT
TTTGACGGGACTGAAGTGATTTACCCTCGTAACGAATGGCACAAAATTACGCTTGCCTATGCCATGTCCATTCACAAATC
ACAAGGGAGTGAATTCCAAGTAGTTATTCTACCAATCACGCGCCAAAGTCGCCGACTTTTGCAACGCAATCTGATTTACA
CAGCCATTACCCGCTCTAAAAGCAAATTGGTTATGTTGGGAGAAATTGCTGCCTTTGATTACGCCATAAAAAATGAAGGC
TCTAAACGCAAGACTTATCTCGTCCAACGCTTCACAGCAAATCCAGAAGACCTTGACAACTCAGAAGCGATAGAAAATCT
AGATGAGACTAAAGAAACCCAAAATGAGCCAGATAAAGCATGTTCTTCCACTGCTCACGTTGAAGAAGAAAAATCCGAAA
AAGTTGTTCAACTTAGCCTTGATTTTGACGAAGACAAACCAGATAACGTCAAAGAATACCGTCTAACAGAAGAAAATCTT
CCATTTATTGATCCAATGATTGGTATCACTCAAGAAGATATCGAACAATTTTTCAAAAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-524)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-639)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BV81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.329

92.317

0.4

Multiple sequence alignment