Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHP95_RS00090 Genome accession   NZ_CP154829
Coordinates   23245..23760 (-) Length   171 a.a.
NCBI ID   WP_002898664.1    Uniprot ID   A0A5Y8XKJ8
Organism   Campylobacter jejuni strain Z1323HCJ0055     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18245..28760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP95_RS00075 (WHP95_00075) - 18357..20174 (-) 1818 WP_052835128.1 motility associated factor glycosyltransferase family protein -
  WHP95_RS00080 (WHP95_00080) - 20171..21994 (-) 1824 WP_093958678.1 motility associated factor glycosyltransferase family protein -
  WHP95_RS00085 (WHP95_00085) - 22004..23245 (-) 1242 WP_002898662.1 DUF2920 family protein -
  WHP95_RS00090 (WHP95_00090) ctsG 23245..23760 (-) 516 WP_002898664.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP95_RS00095 (WHP95_00095) tsaD 23761..24768 (-) 1008 WP_002898666.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHP95_RS00100 (WHP95_00100) - 24765..26159 (-) 1395 WP_038813975.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHP95_RS00105 (WHP95_00105) dxr 26161..27231 (-) 1071 WP_032583833.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHP95_RS00110 (WHP95_00110) cdsA 27228..27953 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  WHP95_RS00115 (WHP95_00115) - 27962..28300 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 6.4683

>NTDB_id=994036 WHP95_RS00090 WP_002898664.1 23245..23760(-) (ctsG) [Campylobacter jejuni strain Z1323HCJ0055]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNVIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=994036 WHP95_RS00090 WP_002898664.1 23245..23760(-) (ctsG) [Campylobacter jejuni strain Z1323HCJ0055]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATCTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGTTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8XKJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.152

100

0.942

Multiple sequence alignment