Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   EQB47_RS08560 Genome accession   NZ_LR129844
Coordinates   1584441..1585712 (+) Length   423 a.a.
NCBI ID   WP_001113213.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-15 isolate 180-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579441..1590712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB47_RS08515 prmA 1579524..1580474 (-) 951 WP_000451160.1 50S ribosomal protein L11 methyltransferase -
  EQB47_RS08520 - 1580612..1581040 (-) 429 WP_000418157.1 NUDIX hydrolase -
  EQB47_RS08525 - 1581021..1582109 (-) 1089 WP_000719712.1 site-2 protease family protein -
  EQB47_RS08530 - 1582128..1582598 (-) 471 WP_000257088.1 DUF3013 family protein -
  EQB47_RS08535 - 1582889..1583341 (-) 453 WP_000961812.1 type II toxin-antitoxin system HicB family antitoxin -
  EQB47_RS08540 - 1583378..1583557 (-) 180 WP_001132285.1 type II toxin-antitoxin system HicA family toxin -
  EQB47_RS08545 - 1583694..1583942 (-) 249 WP_000797237.1 hypothetical protein -
  EQB47_RS08550 - 1583932..1584171 (-) 240 WP_000818079.1 hypothetical protein -
  EQB47_RS08560 rarA 1584441..1585712 (+) 1272 WP_001113213.1 replication-associated recombination protein A Machinery gene
  EQB47_RS08570 - 1586132..1587259 (-) 1128 WP_000323403.1 tyrosine-type recombinase/integrase -
  EQB47_RS08575 - 1587261..1587443 (-) 183 WP_000655518.1 DUF3173 domain-containing protein -
  EQB47_RS08580 - 1587459..1588502 (-) 1044 WP_001031659.1 hypothetical protein -
  EQB47_RS08585 - 1588627..1588890 (-) 264 WP_000665588.1 hypothetical protein -
  EQB47_RS08595 - 1589242..1590558 (-) 1317 WP_000472769.1 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46980.41 Da        Isoelectric Point: 5.9140

>NTDB_id=994032 EQB47_RS08560 WP_001113213.1 1584441..1585712(+) (rarA) [Streptococcus pneumoniae strain 180-15 isolate 180-15]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYTARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWVKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDHLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=994032 EQB47_RS08560 WP_001113213.1 1584441..1585712(+) (rarA) [Streptococcus pneumoniae strain 180-15 isolate 180-15]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATATGGCCCTCCTGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGAGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATACTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATCGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCCCAGAAGATTGGGTTCCCAGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTACGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGGTCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGACCATTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

58.191

96.69

0.563