Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TPHSE_RS18005 Genome accession   NZ_CP154619
Coordinates   3680329..3682143 (-) Length   604 a.a.
NCBI ID   WP_343349119.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain HSE     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3675329..3687143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPHSE_RS17975 (TPHSE_35930) - 3675629..3676735 (+) 1107 WP_343344679.1 DEAD/DEAH box helicase -
  TPHSE_RS17980 (TPHSE_35940) - 3676777..3677043 (-) 267 WP_343344682.1 hypothetical protein -
  TPHSE_RS17985 (TPHSE_35950) - 3677173..3677619 (-) 447 WP_343344685.1 YaiI/YqxD family protein -
  TPHSE_RS17990 (TPHSE_35960) - 3677635..3678504 (-) 870 WP_343344687.1 anti-sigma factor domain-containing protein -
  TPHSE_RS17995 (TPHSE_35970) - 3678513..3679163 (-) 651 WP_343344689.1 RNA polymerase subunit sigma -
  TPHSE_RS18000 (TPHSE_35980) - 3679349..3680179 (-) 831 WP_343344692.1 aldo/keto reductase -
  TPHSE_RS18005 (TPHSE_35990) rcrQ 3680329..3682143 (-) 1815 WP_343349119.1 ABC transporter ATP-binding protein Regulator
  TPHSE_RS18010 (TPHSE_36000) - 3682178..3684481 (-) 2304 WP_343344695.1 ABC transporter ATP-binding protein -
  TPHSE_RS18015 (TPHSE_36010) - 3684510..3684977 (-) 468 WP_343344698.1 MarR family transcriptional regulator -
  TPHSE_RS18020 (TPHSE_36020) - 3685313..3686038 (+) 726 WP_343344701.1 hypothetical protein -
  TPHSE_RS18025 - 3686110..3686271 (-) 162 WP_343349121.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67206.57 Da        Isoelectric Point: 5.5526

>NTDB_id=993802 TPHSE_RS18005 WP_343349119.1 3680329..3682143(-) (rcrQ) [Terrisporobacter petrolearius strain HSE]
MGGPAMNGPVEKAKDFKGTMRTLMSYLAKYKLSIIIVFIFAIGSVTFSVIGPKILGKATTEIFNGLVGKVSGEGSGIDFE
AIKRILIVLVILYIVSAIFSFIQGYVMSGISQKVAYNLRDELVKKINRLPMKYFDTKTHGEVLSRFTNDIDTLAMSLNQS
LTQIITSVTTLVGVLIMMLTISVLMTVSALVVIPISLFIISFVIKKSQKYFKSQQEYLGNVNGQVEELYGGHTVVQAFNG
EEESIKEFNEINNQLYDSAWRAQFLSSTMQPIMMFVGNLSYVVVSILGGYLVIKNRIQVGDIQSFIQYVRSFNQPIAQMA
QISNQLQSTAAAAERVFEFLNEEEEDVTVENPVSIDGLEGRIDFENVKFGYDKDRTIIKDFTAHVKPGQKVALVGPTGAG
KSTMIKLLMRFYDVNSGAILVDGHNVKDFNRGELRELFGMVLQDTWLFSGSIKENIRYGRLNASDDEVINAAKAAHVHHF
IKTLPDGYNMLLNEESSNISQGQKQLLTIARAILADPKILILDEATSSVDTRTELLIQKAMDNLMEGRTSFVIAHRLSTI
RNADLILVINDGDIVEQGNHEELLAKDGFYANLYNSQFEDKEAM

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=993802 TPHSE_RS18005 WP_343349119.1 3680329..3682143(-) (rcrQ) [Terrisporobacter petrolearius strain HSE]
ATGGGTGGTCCTGCAATGAATGGACCAGTAGAAAAAGCTAAAGACTTCAAGGGTACAATGAGAACATTAATGTCTTACTT
GGCTAAATATAAATTATCAATAATAATAGTATTTATATTTGCTATAGGAAGTGTAACATTTTCAGTAATAGGACCTAAAA
TATTAGGTAAAGCTACAACAGAGATATTTAATGGTTTGGTTGGCAAAGTATCTGGAGAAGGTAGTGGAATAGATTTTGAA
GCTATAAAAAGAATATTAATAGTTTTAGTTATACTATATATAGTTAGTGCTATATTCTCATTTATACAAGGTTATGTAAT
GAGTGGTATTTCTCAAAAGGTAGCATATAACCTTAGAGATGAACTAGTGAAAAAAATAAATAGATTGCCTATGAAATATT
TTGACACAAAAACTCACGGTGAAGTACTATCAAGGTTTACAAATGATATAGATACTTTAGCAATGAGTTTAAATCAAAGT
TTAACACAAATAATAACATCTGTTACTACTTTAGTAGGAGTATTAATAATGATGCTAACTATAAGTGTACTTATGACAGT
TAGTGCATTAGTGGTCATACCAATATCATTATTTATAATTTCTTTTGTTATTAAAAAATCTCAAAAGTACTTTAAGAGCC
AACAAGAATACTTAGGGAATGTAAATGGACAGGTGGAAGAATTATATGGTGGTCACACAGTAGTTCAAGCATTTAATGGA
GAAGAAGAATCTATAAAAGAATTCAATGAAATTAATAACCAACTATATGATTCAGCATGGAGAGCGCAATTTTTATCAAG
TACAATGCAGCCTATAATGATGTTTGTAGGAAACTTAAGTTATGTTGTGGTTTCAATACTTGGTGGATATTTAGTTATAA
AAAATAGAATTCAAGTAGGAGATATACAGTCATTTATTCAATATGTAAGAAGTTTTAATCAACCAATAGCACAAATGGCT
CAAATATCAAATCAATTACAATCTACTGCAGCTGCAGCTGAGAGAGTATTTGAATTCCTAAATGAAGAGGAAGAAGATGT
AACAGTAGAAAATCCTGTAAGTATAGACGGATTAGAAGGTAGAATTGATTTTGAAAATGTTAAGTTTGGATACGATAAAG
ACAGAACTATAATTAAAGACTTTACAGCTCATGTAAAACCAGGACAAAAAGTTGCACTAGTTGGTCCTACAGGAGCAGGT
AAATCAACTATGATAAAATTATTAATGAGATTCTATGATGTAAACTCTGGAGCTATTCTTGTGGATGGTCACAATGTTAA
AGATTTCAATAGAGGAGAACTTAGAGAATTATTTGGAATGGTTCTTCAAGATACTTGGTTATTTAGTGGTTCAATAAAAG
AAAATATTAGATATGGTAGATTAAATGCTAGTGATGATGAAGTAATAAATGCTGCTAAAGCAGCTCATGTTCATCATTTT
ATAAAAACTTTACCAGATGGATATAATATGTTATTGAATGAAGAATCGAGTAATATATCACAAGGTCAAAAACAATTATT
AACTATAGCTCGTGCTATATTGGCAGATCCTAAAATATTAATCTTAGATGAAGCAACAAGTTCTGTTGATACAAGAACTG
AACTTTTAATACAAAAAGCTATGGATAATTTAATGGAAGGAAGAACAAGTTTTGTAATTGCTCACAGATTATCAACTATA
AGAAATGCAGATTTAATATTAGTTATTAATGATGGAGATATTGTTGAGCAAGGAAATCACGAAGAATTATTAGCAAAAGA
TGGTTTCTATGCAAATCTATATAATTCACAATTTGAAGACAAAGAAGCTATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-315)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

49.744

97.185

0.483

Multiple sequence alignment