Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QMG88_RS00720 Genome accession   NZ_AP027052
Coordinates   151891..152601 (-) Length   236 a.a.
NCBI ID   WP_281828218.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 146891..157601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS00695 (TUMSATVNIG3_01290) - 147201..147959 (+) 759 WP_022591508.1 type II secretion system protein N -
  QMG88_RS00700 (TUMSATVNIG3_01300) nudE 148119..148673 (+) 555 WP_022591507.1 ADP compounds hydrolase NudE -
  QMG88_RS00705 (TUMSATVNIG3_01310) cysQ 148685..149503 (+) 819 WP_022551827.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QMG88_RS00710 (TUMSATVNIG3_01320) - 149804..151123 (+) 1320 WP_281828216.1 trypsin-like serine protease -
  QMG88_RS00715 (TUMSATVNIG3_01330) nfuA 151213..151800 (-) 588 WP_004404517.1 Fe-S biogenesis protein NfuA -
  QMG88_RS00720 (TUMSATVNIG3_01340) comF 151891..152601 (-) 711 WP_281828218.1 phosphoribosyltransferase family protein Machinery gene
  QMG88_RS00725 (TUMSATVNIG3_01350) bioH 152678..153442 (+) 765 WP_281828220.1 pimeloyl-ACP methyl ester esterase BioH -
  QMG88_RS00730 (TUMSATVNIG3_01360) - 153583..154047 (+) 465 WP_004404522.1 hypothetical protein -
  QMG88_RS00735 (TUMSATVNIG3_01370) plsB 154105..156528 (-) 2424 WP_281828223.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  QMG88_RS00740 (TUMSATVNIG3_01380) lexA 156858..157475 (+) 618 WP_004404532.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27262.76 Da        Isoelectric Point: 8.3354

>NTDB_id=99359 QMG88_RS00720 WP_281828218.1 151891..152601(-) (comF) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MVISSWLKLKLHRYFNLQCPLCGLNIEEPTPETRWCKHCLNSMSDPCRCQCCGLPTLEPVEFCGECISNPPPWHRLYCVN
DYRPPLSHYIHSLKFQHQFRLAPDLSYLLAQKITEPADVITSVPLHWRRELIRGYNQSDHLARALCQHLNMPERFNPNLF
KRVKYTAPQLGQDKKARHRNLYGAFRLIAPPAAKHVAIVDDVVTTGSTIRQMCNLLLDVGVETIDIYCICRTPEPK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=99359 QMG88_RS00720 WP_281828218.1 151891..152601(-) (comF) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGGTGATTTCCAGCTGGCTAAAGCTCAAATTACACCGTTATTTTAATCTGCAATGCCCGCTATGTGGTCTGAACATTGA
AGAGCCCACACCAGAGACACGATGGTGCAAACATTGCCTGAACAGCATGAGCGATCCTTGCCGTTGCCAATGCTGCGGGC
TGCCTACTTTGGAACCCGTTGAATTCTGTGGTGAGTGCATAAGTAACCCACCTCCCTGGCACCGTCTGTATTGTGTGAAC
GACTATCGTCCACCGCTTTCGCATTATATCCACAGCCTGAAATTTCAGCATCAGTTTCGGCTAGCCCCTGACCTCAGCTA
CTTACTTGCGCAGAAAATTACAGAGCCTGCCGACGTGATTACTTCTGTCCCGCTTCACTGGCGCAGAGAACTGATACGCG
GCTACAACCAGAGTGACCATCTGGCAAGAGCATTGTGTCAGCATCTCAATATGCCCGAACGATTTAATCCGAATCTGTTC
AAGCGGGTGAAATATACTGCACCTCAACTCGGTCAGGATAAAAAGGCGAGGCATAGAAACCTTTATGGTGCTTTTCGGTT
AATTGCGCCTCCAGCTGCAAAGCACGTAGCAATCGTCGACGATGTGGTGACAACGGGCAGCACTATCCGACAAATGTGTA
ATTTACTGCTTGATGTTGGCGTAGAAACCATCGATATTTACTGCATATGCCGAACCCCTGAGCCGAAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.34

99.576

0.521
  comF Vibrio campbellii strain DS40M4

47.718

100

0.487

Multiple sequence alignment