Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AAHT65_RS20770 Genome accession   NZ_CP154443
Coordinates   4111626..4113986 (-) Length   786 a.a.
NCBI ID   WP_343310759.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4106626..4118986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS20750 (AAHT65_20745) - 4106667..4108247 (+) 1581 WP_343310758.1 SH3 domain-containing protein -
  AAHT65_RS20755 (AAHT65_20750) dtd 4108279..4108722 (-) 444 WP_061572688.1 D-aminoacyl-tRNA deacylase -
  AAHT65_RS20760 (AAHT65_20755) relA 4108735..4110939 (-) 2205 WP_003325298.1 GTP diphosphokinase -
  AAHT65_RS20765 (AAHT65_20760) - 4111108..4111620 (-) 513 WP_003325297.1 adenine phosphoribosyltransferase -
  AAHT65_RS20770 (AAHT65_20765) recJ 4111626..4113986 (-) 2361 WP_343310759.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AAHT65_RS20775 (AAHT65_20770) - 4114054..4114392 (-) 339 WP_343310760.1 lipopolysaccharide assembly LapA domain-containing protein -
  AAHT65_RS20780 (AAHT65_20775) - 4114469..4114966 (-) 498 WP_003325293.1 cation:proton antiporter regulatory subunit -
  AAHT65_RS20785 (AAHT65_20780) secDF 4115164..4117386 (-) 2223 WP_343310761.1 protein translocase subunit SecDF -
  AAHT65_RS20790 (AAHT65_20785) - 4117425..4117721 (-) 297 WP_003325291.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88193.88 Da        Isoelectric Point: 4.9308

>NTDB_id=993471 AAHT65_RS20770 WP_343310759.1 4111626..4113986(-) (recJ) [Bacillus atrophaeus strain SW]
MLASKMRWEIQRPDQDKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLNTKEADFYDPFEMKGMKEAVERIKEAISQQ
EPIMIYGDYDADGVTSTSVMLKTLQKLSAHVDFYIPDRFKEGYGPNEQAFRSIKEQGFSLIITVDTGIAAVHEAEAAKEL
GLDVIITDHHEPGPVLPDVCAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGALPEDLLDLAAIGTIADLVPLHDENRLL
ATLGMQKLRMTNRPGLKALIKLSGGDIGQANEETIGFQLAPRLNAVGRIEQADPAVHLLMTEDEFEADELATEIDQLNKE
RQKIVSKMTDEAIEMIEQQGLNRSAIVVAKPGWNPGVVGIVASKLVDRFYRPAVVLGIDEEKGIAKGSARSIKGFDLFKS
LSSCRDILPHFGGHPMAAGMTLSADDVSDLRDRLNQIADETLTEEDFIPVQEIDLVCSVEDITVESISEINLLSPFGMQN
PKPHVMVENALLEDVRRIGANKNHIKMTVKDQSAKLDCVGFHKGELETGIVPGSRISLVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRTWEETLVALPSEKRVIVCFKEETKQLLQNEELRHQLHAVSSEQEARDLELDGAYVVFLDAPPSLDL
LSSLVEGKRPERVYFIFMNNEEHFLSAFPTRDYFKWYYGFLLKRGTFDLKTHGSELAKHKGWTKDTINFMTKVFFDLGFV
RIENGVLSVIYDVKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMNQDSGAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=993471 AAHT65_RS20770 WP_343310759.1 4111626..4113986(-) (recJ) [Bacillus atrophaeus strain SW]
ATGTTAGCGTCAAAAATGCGTTGGGAAATACAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTGGCATCTCTGCTTGTAAAAAGAGGATTTGATACAGCGGAAAGCGCAAGGCTGTTTTTAAATACAAAAG
AAGCTGATTTTTATGATCCCTTTGAGATGAAGGGCATGAAAGAAGCAGTTGAGCGGATTAAAGAGGCCATTTCACAGCAA
GAGCCCATTATGATATACGGAGATTATGATGCGGACGGCGTCACCAGTACGTCCGTCATGCTGAAAACATTACAAAAGCT
CTCGGCTCACGTTGACTTTTACATACCTGACCGGTTTAAAGAGGGCTACGGACCGAATGAGCAAGCCTTCCGCTCGATTA
AAGAGCAAGGCTTCTCTCTTATTATCACGGTTGATACGGGGATTGCGGCTGTTCATGAAGCAGAGGCAGCGAAGGAACTA
GGACTGGATGTCATCATCACTGACCACCATGAGCCCGGCCCTGTGCTGCCTGATGTGTGTGCCATTGTTCATCCGAAGCA
GCCGGGTTGCACCTATCCGTTTAAGGAGCTTGCCGGAGTGGGTGTGGCGTTTAAGCTTGCACATGCTCTTTTAGGCGCTT
TGCCTGAGGACCTGCTCGATTTGGCGGCAATCGGAACTATAGCCGATCTTGTGCCGCTGCATGATGAAAACAGATTATTA
GCAACGTTAGGCATGCAGAAGCTTCGAATGACAAACCGGCCGGGGCTAAAAGCATTGATTAAACTATCAGGCGGTGACAT
CGGGCAAGCGAATGAAGAAACAATCGGATTTCAGCTTGCACCGAGGCTTAATGCTGTCGGGAGAATTGAACAGGCTGATC
CGGCTGTCCATCTGCTGATGACAGAGGATGAGTTCGAAGCAGATGAGCTTGCAACTGAAATCGACCAGCTCAACAAAGAG
CGCCAAAAGATTGTCAGCAAAATGACGGATGAAGCGATTGAAATGATTGAGCAGCAAGGGCTCAATAGATCTGCCATCGT
AGTGGCAAAGCCCGGCTGGAACCCCGGGGTTGTCGGCATTGTGGCTTCAAAGCTTGTTGACCGTTTTTACCGTCCGGCCG
TTGTTCTTGGAATTGATGAAGAAAAGGGCATCGCGAAAGGATCGGCTCGAAGCATTAAAGGCTTTGATTTATTTAAAAGC
CTTTCTTCTTGCAGAGACATCCTTCCCCATTTCGGAGGACATCCGATGGCTGCAGGAATGACACTTTCTGCTGATGATGT
ATCTGACTTGAGGGACAGGCTCAATCAAATCGCGGATGAGACGCTTACAGAAGAGGATTTTATTCCGGTTCAGGAAATTG
ATCTCGTATGCAGCGTAGAGGATATTACGGTTGAAAGCATTTCTGAAATCAATCTCCTGTCTCCCTTTGGCATGCAGAAT
CCGAAACCGCATGTGATGGTGGAAAATGCGCTTTTGGAAGACGTCCGGAGAATCGGAGCCAATAAAAACCATATCAAAAT
GACGGTCAAAGACCAATCGGCAAAGCTTGATTGTGTCGGCTTTCATAAGGGGGAGCTTGAGACAGGTATTGTGCCAGGTT
CAAGAATCTCATTAGTCGGCGAAATGTCGATTAACGAATGGAATAACAGAAAAAAACCTCAGTTAATGATAAAGGATGCA
GCCGTTTCTGAGTGGCAGCTGTTTGACTTGCGTGGAAAACGTACGTGGGAAGAGACATTAGTTGCGCTTCCGTCTGAAAA
ACGGGTCATTGTTTGTTTTAAGGAGGAAACGAAACAGCTGCTTCAAAACGAAGAGCTGCGCCATCAGCTGCATGCGGTGA
GCTCGGAGCAGGAAGCGAGAGACCTTGAACTGGACGGCGCATATGTGGTATTCCTTGATGCGCCTCCTTCATTAGATCTG
CTTTCAAGCTTGGTAGAAGGAAAGAGACCCGAGCGTGTCTATTTTATCTTTATGAATAACGAGGAGCATTTTCTGTCAGC
ATTTCCGACCCGGGATTATTTTAAATGGTACTACGGTTTCTTGCTGAAAAGAGGAACTTTCGATCTGAAAACACACGGTT
CAGAGCTTGCAAAACATAAAGGCTGGACAAAAGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AGAATAGAGAATGGCGTGCTGTCTGTTATTTATGATGTGAAAAAACGCGATTTGACAGACTCGCAAACCTATCAGGCAAA
ACAGCAGCTGATGGAATTGGATCAGAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
ATCAAGATTCAGGGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(83-226)

RecJ OB domain (RecJ_OB)

(453-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

84.478

100

0.845

Multiple sequence alignment