Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAHT65_RS15510 Genome accession   NZ_CP154443
Coordinates   3044068..3044847 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3039068..3049847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS15490 (AAHT65_15490) trmFO 3039763..3041070 (+) 1308 WP_061571556.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAHT65_RS15495 (AAHT65_15495) xerC 3041137..3042051 (+) 915 WP_010788602.1 tyrosine recombinase XerC -
  AAHT65_RS15500 (AAHT65_15500) clpQ 3042065..3042610 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  AAHT65_RS15505 (AAHT65_15505) hslU 3042627..3044030 (+) 1404 WP_010788603.1 HslU--HslV peptidase ATPase subunit -
  AAHT65_RS15510 (AAHT65_15510) codY 3044068..3044847 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAHT65_RS15515 (AAHT65_15515) flgB 3045269..3045658 (+) 390 WP_088117154.1 flagellar basal body rod protein FlgB -
  AAHT65_RS15520 (AAHT65_15520) flgC 3045658..3046107 (+) 450 WP_343310471.1 flagellar basal body rod protein FlgC -
  AAHT65_RS15525 (AAHT65_15525) fliE 3046118..3046438 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  AAHT65_RS15530 (AAHT65_15530) fliF 3046482..3048089 (+) 1608 WP_088117155.1 flagellar basal-body MS-ring/collar protein FliF -
  AAHT65_RS15535 (AAHT65_15535) fliG 3048102..3049118 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=993452 AAHT65_RS15510 WP_003328951.1 3044068..3044847(+) (codY) [Bacillus atrophaeus strain SW]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=993452 AAHT65_RS15510 WP_003328951.1 3044068..3044847(+) (codY) [Bacillus atrophaeus strain SW]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTGTTAGGCTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCTATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAACAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment