Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAHT65_RS15480 Genome accession   NZ_CP154443
Coordinates   3036524..3037423 (+) Length   299 a.a.
NCBI ID   WP_343310470.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3031524..3042423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS15460 (AAHT65_15460) - 3032174..3033922 (+) 1749 WP_343310469.1 hypothetical protein -
  AAHT65_RS15465 (AAHT65_15465) - 3033919..3034200 (+) 282 WP_010788597.1 FlhB-like flagellar biosynthesis protein -
  AAHT65_RS15470 (AAHT65_15470) sucC 3034374..3035531 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  AAHT65_RS15475 (AAHT65_15475) sucD 3035560..3036462 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  AAHT65_RS15480 (AAHT65_15480) dprA 3036524..3037423 (+) 900 WP_343310470.1 DNA-processing protein DprA Machinery gene
  AAHT65_RS15485 (AAHT65_15485) topA 3037612..3039687 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  AAHT65_RS15490 (AAHT65_15490) trmFO 3039763..3041070 (+) 1308 WP_061571556.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAHT65_RS15495 (AAHT65_15495) xerC 3041137..3042051 (+) 915 WP_010788602.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33261.34 Da        Isoelectric Point: 9.4324

>NTDB_id=993451 AAHT65_RS15480 WP_343310470.1 3036524..3037423(+) (dprA) [Bacillus atrophaeus strain SW]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTEPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIKAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEENVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=993451 AAHT65_RS15480 WP_343310470.1 3036524..3037423(+) (dprA) [Bacillus atrophaeus strain SW]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGAACCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAACTTGCAGGCAACCAGTGGATCATTGTAAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAAGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTCC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGAAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

74.582

100

0.746

Multiple sequence alignment