Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   E0E14_RS07190 Genome accession   NZ_LR027877
Coordinates   1434232..1435005 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate BPH3244     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1429232..1440005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E14_RS07155 - 1429485..1430255 (-) 771 WP_000473701.1 isoprenyl transferase -
  E0E14_RS07160 frr 1430628..1431182 (-) 555 WP_001280006.1 ribosome recycling factor -
  E0E14_RS07165 pyrH 1431201..1431923 (-) 723 WP_000057330.1 UMP kinase -
  E0E14_RS07170 tsf 1432060..1432941 (-) 882 WP_000201387.1 translation elongation factor Ts -
  E0E14_RS07175 - 1432976..1433089 (-) 114 WP_001789890.1 hypothetical protein -
  E0E14_RS07180 rpsB 1433123..1433890 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  E0E14_RS07185 - 1434089..1434181 (-) 93 WP_001790530.1 hypothetical protein -
  E0E14_RS07190 codY 1434232..1435005 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  E0E14_RS07195 hslU 1435030..1436433 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  E0E14_RS07200 hslV 1436499..1437044 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  E0E14_RS07205 xerC 1437041..1437937 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  E0E14_RS07210 trmFO 1438354..1439661 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=993379 E0E14_RS07190 WP_000055337.1 1434232..1435005(-) (codY) [Staphylococcus aureus isolate BPH3244]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=993379 E0E14_RS07190 WP_000055337.1 1434232..1435005(-) (codY) [Staphylococcus aureus isolate BPH3244]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428