Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAHT66_RS17425 Genome accession   NZ_CP154441
Coordinates   3327976..3328869 (-) Length   297 a.a.
NCBI ID   WP_253269092.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3322976..3333869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS17410 (AAHT66_17410) xerC 3323350..3324264 (-) 915 WP_087992063.1 tyrosine recombinase XerC -
  AAHT66_RS17415 (AAHT66_17415) trmFO 3324331..3325638 (-) 1308 WP_087992064.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAHT66_RS17420 (AAHT66_17420) topA 3325714..3327789 (-) 2076 WP_253269093.1 type I DNA topoisomerase -
  AAHT66_RS17425 (AAHT66_17425) dprA 3327976..3328869 (-) 894 WP_253269092.1 DNA-processing protein DprA Machinery gene
  AAHT66_RS17430 (AAHT66_17430) sucD 3328930..3329832 (-) 903 WP_253269091.1 succinate--CoA ligase subunit alpha -
  AAHT66_RS17435 (AAHT66_17435) sucC 3329861..3331018 (-) 1158 WP_148961835.1 ADP-forming succinate--CoA ligase subunit beta -
  AAHT66_RS17440 (AAHT66_17440) - 3331192..3331473 (-) 282 WP_087992069.1 FlhB-like flagellar biosynthesis protein -
  AAHT66_RS17445 (AAHT66_17445) - 3331470..3333200 (-) 1731 WP_253269090.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33046.38 Da        Isoelectric Point: 9.7079

>NTDB_id=993374 AAHT66_RS17425 WP_253269092.1 3327976..3328869(-) (dprA) [Bacillus inaquosorum strain XN303]
MDQAAACLMNCRINQLLSPSLLLKWWKADPSMSLTSPMLETVTRGKREAAALKNKIEKHYPKLQRVLASYHEQGIIPIPI
SSKQYPFWLQTIYDPPAVLFAKGDMALLSEGRKIGIVGTRNPTAYGMHVVNHLTKELCRKEWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFHHIYPRENLQLANHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDVFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=993374 AAHT66_RS17425 WP_253269092.1 3327976..3328869(-) (dprA) [Bacillus inaquosorum strain XN303]
TTGGATCAGGCCGCTGCCTGTTTAATGAATTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCATCTATGTCGCTGACATCACCCATGTTAGAAACTGTTACTCGCGGTAAAAGAGAGGCAGCTGCATTAAAAA
ACAAAATAGAAAAACATTATCCAAAGCTTCAGCGTGTACTTGCTTCTTACCATGAGCAAGGCATTATCCCCATCCCGATT
TCTTCTAAGCAATATCCTTTCTGGCTGCAAACCATTTATGATCCCCCCGCCGTCCTGTTTGCAAAGGGTGATATGGCTCT
TCTTTCCGAAGGGAGGAAAATTGGAATTGTAGGTACAAGAAATCCAACAGCTTATGGGATGCATGTTGTCAATCACCTTA
CTAAAGAGCTTTGCCGCAAAGAGTGGGTGATTGTCAGCGGACTTGCGTCTGGGATAGACGGAATGTCCCACGCGGCAAGT
ATTAAGGCGAAGGGGCGGACAATCGGCGTCATTGCAGGGGGATTTCATCACATTTATCCCCGGGAAAACCTTCAGTTAGC
AAATCACATGGCAAAACACCATATCCTTCTGTCAGAGCATCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATCATCAGCGGATTAAGTGAAGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCA
TATCAAGCACTGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATTCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATGTTTTCGAGGAGCTTCCTGAAAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

90.236

100

0.902

Multiple sequence alignment