Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AAHT66_RS17395 Genome accession   NZ_CP154441
Coordinates   3320553..3321332 (-) Length   259 a.a.
NCBI ID   WP_087992061.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3315553..3326332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS17365 (AAHT66_17365) fliH 3315571..3316323 (-) 753 WP_087991594.1 flagellar assembly protein FliH -
  AAHT66_RS17370 (AAHT66_17370) fliG 3316316..3317332 (-) 1017 WP_087991592.1 flagellar motor switch protein FliG -
  AAHT66_RS17375 (AAHT66_17375) fliF 3317345..3318952 (-) 1608 WP_087991590.1 flagellar basal-body MS-ring/collar protein FliF -
  AAHT66_RS17380 (AAHT66_17380) fliE 3318998..3319318 (-) 321 WP_087991588.1 flagellar hook-basal body complex protein FliE -
  AAHT66_RS17385 (AAHT66_17385) flgC 3319330..3319782 (-) 453 WP_087991587.1 flagellar basal body rod protein FlgC -
  AAHT66_RS17390 (AAHT66_17390) flgB 3319782..3320171 (-) 390 WP_087991586.1 flagellar basal body rod protein FlgB -
  AAHT66_RS17395 (AAHT66_17395) codY 3320553..3321332 (-) 780 WP_087992061.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AAHT66_RS17400 (AAHT66_17400) hslU 3321372..3322784 (-) 1413 WP_277986970.1 HslU--HslV peptidase ATPase subunit -
  AAHT66_RS17405 (AAHT66_17405) clpQ 3322792..3323337 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  AAHT66_RS17410 (AAHT66_17410) xerC 3323350..3324264 (-) 915 WP_087992063.1 tyrosine recombinase XerC -
  AAHT66_RS17415 (AAHT66_17415) trmFO 3324331..3325638 (-) 1308 WP_087992064.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29027.25 Da        Isoelectric Point: 4.6514

>NTDB_id=993373 AAHT66_RS17395 WP_087992061.1 3320553..3321332(-) (codY) [Bacillus inaquosorum strain XN303]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFQDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=993373 AAHT66_RS17395 WP_087992061.1 3320553..3321332(-) (codY) [Bacillus inaquosorum strain XN303]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTGAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGACGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGACCGCATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTTCCTGAAACATCTTCTAACTTGGATATTAACAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATCATCGGAGGCGGAGAAAGATTAGGGACACTCATTCTTTCACGTTTACAGGATC
AATTTCAAGACGATGATTTAATTCTCGCTGAATACGGTGCTACAGTTGTCGGAATGGAAATCTTGCGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGTAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GATCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCTGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGCTTAACAACAAATTCCTAATTGAATTAGAAAATCTCAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment