Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AAHT66_RS10875 Genome accession   NZ_CP154441
Coordinates   2104132..2106528 (+) Length   798 a.a.
NCBI ID   WP_087992268.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain XN303     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2099132..2111528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT66_RS10850 (AAHT66_10850) - 2099215..2100480 (-) 1266 WP_202327070.1 replication-associated recombination protein A -
  AAHT66_RS10855 (AAHT66_10855) cymR 2100681..2101097 (+) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  AAHT66_RS10860 (AAHT66_10860) - 2101116..2102258 (+) 1143 WP_202327072.1 cysteine desulfurase family protein -
  AAHT66_RS10865 (AAHT66_10865) mnmA 2102287..2103402 (+) 1116 WP_087992270.1 tRNA 2-thiouridine(34) synthase MnmA -
  AAHT66_RS10870 (AAHT66_10870) - 2103488..2104108 (+) 621 WP_250621905.1 tetratricopeptide repeat protein -
  AAHT66_RS10875 (AAHT66_10875) recD2 2104132..2106528 (+) 2397 WP_087992268.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AAHT66_RS10880 (AAHT66_10880) - 2106584..2107108 (+) 525 WP_087992267.1 PRC-barrel domain-containing protein -
  AAHT66_RS10885 (AAHT66_10885) - 2107120..2107311 (+) 192 WP_087992266.1 hypothetical protein -
  AAHT66_RS10890 (AAHT66_10890) - 2107333..2107464 (+) 132 WP_087992265.1 YrzQ family protein -
  AAHT66_RS10895 (AAHT66_10895) - 2107561..2108622 (+) 1062 WP_087992264.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89180.82 Da        Isoelectric Point: 5.1125

>NTDB_id=993353 AAHT66_RS10875 WP_087992268.1 2104132..2106528(+) (recD2) [Bacillus inaquosorum strain XN303]
MQQHPDQLNMEEEPYLKGTVNTVIYHNDTNLYTVLKVKVRETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIVHYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSDGHTYIETEQLIIDTQSLLNQSAKEGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EVFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHMFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTALRNRLSIQIEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEGQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=993353 AAHT66_RS10875 WP_087992268.1 2104132..2106528(+) (recD2) [Bacillus inaquosorum strain XN303]
GTGCAGCAGCATCCGGATCAGCTTAACATGGAGGAAGAGCCCTATCTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCAGAGAGACCTCCGAAGCCATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGCAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCGACGACTAAAGAAGGCATCGTTCACTATTTATCAAGTGATTTGTT
CGAGGGGATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAACTGGGTGACAGCGCGATTAATAAAATACTAGCTGACG
CTTCAGTGCTTTACGATGTTCCAAGGCTGTCAAAAAAGAAAGCCGACACGCTAGCCGGCGCCCTGCAGCGGCATCAGGGA
CTGGAACAAATCATGATATCCCTTAATCAGTTTGGATTCGGTCCGCAGCTGTCTATGAAAATCTATCAAGCCTATGAATC
GGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGCATCGGGTTTGGAAAAGCGGATG
AACTGGGCAGCAGAATGGGGCTTTCGGGTAATCATCCTGAGCGGGTAAAAGCCGCCATTTTGTACACGCTTGAAACAACT
TGTCTGTCAGATGGGCATACGTACATAGAAACGGAACAGCTCATTATCGATACCCAATCACTGTTAAATCAGTCAGCAAA
GGAAGGGCAGCGCATCACAGAAATGGATGCAGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGCCGCTGTTATTTCCCATCGCTGTTTTACGCGGAACAAAATGTTGCGAAGCGCGTGAAACATATCGCAAGCCAAACC
GAATATGACGACCAGTTTCCTGAATCAGAATTTCTGCTCGCTTTGGGAGAACTGGAGGAACGGATGAACGTTCAGTATGC
CCCCAGCCAAAAGGAAGCGATTCAAAAAGCCCTTTCCTCACCGATGCTGCTTTTAACGGGAGGCCCGGGAACAGGGAAAA
CGACGGTAATCAGAGGGATTGTCGAACTGTACGGAGAGCTTCACGGTGTGTCGCTAGACCCGTCAGCTTATAAAAAGGAT
GAAGTCTTTCCGATTGTATTGGCCGCACCGACAGGGAGAGCGGCGAAACGGATGAGTGAATCAACGGGCCTTCCGGCAGT
CACGATTCACAGGCTCCTTGGCTGGAATGGCGCAGAGGGCTTTACCCATACAGAGGATCAGCCGATCGAAGGGAAGCTGT
TAATCATCGATGAAGCGAGTATGCTTGATATATGGCTTGCAAACCATATGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATCGTCGGAGACGAAGATCAGCTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCTCAGGTGAT
ACCCACTGTGAGACTGACAGATATTTACCGCCAGGCGGAAGGATCATCAATCGTCGAGCTTGCCCATCAGATGAAAAATG
GTTTGCTGCCAAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGAGGATCGCAAATTAAAGAGGTA
GTTGAAAAGGTCGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTTCTCGCTCCGATGTACAGAGG
AAAAGCCGGGATCAATGAACTAAATGTAATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAGGGAATTGAAAT
TCGGAGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTCGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATTACGTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGATATGGCTGTCGTTTCTTTTGACGGGAA
TGAAATGACGTTTACGAAAAAAGACTTTAACCAGTTTACACACGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAGTTTCTCATTTTATGCGGAGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGACGCAACGGTCAG
GCAGACCGCCTTGAGAAACAGGCTCTCAATACAGATTGAGGAAATGGATGCTGAGCTTGAGGCTTTGCAAAAAGAGCTCC
CATTCAGCGTACACGATGCCAATATTGGTATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGGACAGCTGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(346-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

97.867

99.875

0.977

Multiple sequence alignment