Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AAIB43_RS06260 Genome accession   NZ_CP154366
Coordinates   1300736..1303123 (+) Length   795 a.a.
NCBI ID   WP_069795638.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain 14BME10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1295736..1308123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIB43_RS06240 (AAIB43_06245) sal 1295981..1297612 (+) 1632 WP_081325876.1 Sal family ABC-F type ribosomal protection protein -
  AAIB43_RS06245 (AAIB43_06250) - 1297673..1298818 (+) 1146 WP_069795639.1 cysteine desulfurase family protein -
  AAIB43_RS06250 (AAIB43_06255) mnmA 1298819..1299931 (+) 1113 WP_042362572.1 tRNA 2-thiouridine(34) synthase MnmA -
  AAIB43_RS06255 (AAIB43_06260) - 1300064..1300732 (+) 669 WP_047172281.1 tetratricopeptide repeat protein -
  AAIB43_RS06260 (AAIB43_06265) recD2 1300736..1303123 (+) 2388 WP_069795638.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AAIB43_RS06265 (AAIB43_06270) alaS 1303472..1306102 (+) 2631 WP_047172282.1 alanine--tRNA ligase -
  AAIB43_RS06270 (AAIB43_06275) - 1306171..1306431 (+) 261 WP_029377131.1 IreB family regulatory phosphoprotein -
  AAIB43_RS06275 (AAIB43_06280) ruvX 1306435..1306863 (+) 429 WP_047172283.1 Holliday junction resolvase RuvX -
  AAIB43_RS06280 (AAIB43_06285) - 1306880..1307218 (+) 339 WP_047172284.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89515.07 Da        Isoelectric Point: 4.5250

>NTDB_id=993069 AAIB43_RS06260 WP_069795638.1 1300736..1303123(+) (recD2) [Staphylococcus xylosus strain 14BME10]
MENPTLFNNSMIKGTVDAILFQNKANFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTILEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVEKKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPGELIETQQLDQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGEIEERNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVILG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGETIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCAFLKAYFNNEEETETADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=993069 AAIB43_RS06260 WP_069795638.1 1300736..1303123(+) (recD2) [Staphylococcus xylosus strain 14BME10]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGATGCGATTTTGTTTCAAAACAAAGCGAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAATGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTCCCAG
ATATTGCAGAAGGTGACGTCTATACATTTAAAGGCCAAGTAGTTACACATGCAAAATATGGCAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACGAAAGAAGCAATTATAAGTTATTTATCTAGTGATCTTTTTAAAGGAATAGGTAA
AAAAACGGCTCAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTATATTAGAAA
AAGTACCTAGTTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATCGCAAGTAATCAAGAAACGGAACAAATAATC
ATTCGCCTCCATGATCTAGGTTTTGGGCCAAAGTTAGCAATGGCTATATACCAAGCATATTTAGGAGAAACACTTAACGT
AGTTGAAAAGAAACCTTATCAACTTGTATATGATGTCAAAGGCATCGGTTTTAATAAGGCAGACACATTAGCGCGTAATG
TCGGCATTCAATTTAACGATGCAGAACGTCTTAAAGCAGGGTTACTTTATGTGTTAGAAGAAGAATGTATAAAACAAGGT
CATACGTATTTACCTACTAATAATGTACTAGAGATGACTCAAGATATGCTATCACAACCACCAGGTGAACTAATAGAAAC
ACAGCAGCTTGACCAAGTTTTACAAGATTTAGTTAATGACACTAAATTAATTCAACAAGAAAATGAAGTTGCGATTCCAA
GTCTATACTATTCAGAATTGAAAAGCGTTCAAAATTTATACCGTAATTTTTCTTATACAAATAAACTAAAAGAAATTGAG
CAATCTGATTTGCTGCTTGAAATAGGAGAAATTGAGGAACGCAATAAAGTGACATATGCAGATTCTCAAAGAGAAGCCTT
GCAAACAGCGATTAATTCTAAAATAATGTTACTGACTGGTGGCCCAGGTACAGGAAAAACAACTGTCATTAAAGGAATTG
TTGAACTTTATGCAGAGTTGCATGGTCTATCATTAGATTATGACGATTATCAAAATGATGATTATCCAGTAATTCTAGGT
GCGCCAACTGGACGTGCATCGAAGCGTTTGTCAGAGTCAACTGGTTTAGAGGCTATGACGATACATCGCTTAATAGGTTG
GAATCAAGATACACAACCAGAAGATATTTTAGATAATGAAATTTCTGCAAAACTTATTATTATTGATGAAATGTCTATGG
TTGATACATGGTTATTCCATCAATTTTTGAGTGCTGTACCTATTGATGCGCAAGTTATACTAGTCGGTGATGAAGATCAG
CTGCCATCTGTTGGACCAGGCCAAGTATTTAAAGATTTAATTGATTCGAAAGTAATTCCTCGTGTAAATTTAACTGAAGT
TTACCGACAACAAGATGGTTCAAGTATTATAGAATTAGCGCATAGGATGAAACTAGGAGAAACTATTGATATTACACAGA
GATTTCATGACCGTAATTTTATAAACTGTACAACAGAACAGATACCTTCAGTTGTTGAAAAAGTGGTGTCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGGTCTGCAGGTATTAAGAAACTAAATAC
AGTACTGCAAGATATCTTGAATCCCAAAGAACAAGATACTAGAGAAATTGAGTTTGGTGATATTGTCTTTAGAAAAGGTG
ATAAGGTATTACAACTAGTTAACCGACCAAGCGATAATATATTTAATGGTGATATCGGGGTCATTGTAGGCATCTTCTGG
GCTAAAGAAAATGCATTAAACAAAGATGTATTGGTAGTTGATTTTGAAGGTAATGAGATTACATTTGTTCGTCAAGACTT
AATGGAGTTGACGCATGCCTATTGTACTTCAATCCATAAGTCACAAGGATCAGAATTTCCGATCGTGATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACACGTGCTAAACAGTCACTTGTGTTCTTA
GGAGATCCACAAGCATTTGATATTGGTCTAAAGACTCATGGCCAAGTGAGAATGACACAATTGTGTGCTTTTCTTAAAGC
GTATTTTAATAATGAGGAAGAAACTGAAACTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGTGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50

99.874

0.499

Multiple sequence alignment