Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   TTHNP4_RS09975 Genome accession   NZ_LR027517
Coordinates   1784948..1786213 (-) Length   421 a.a.
NCBI ID   WP_124105295.1    Uniprot ID   -
Organism   Thermus thermophilus isolate TTHNAR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1779948..1791213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTHNP4_RS09945 (TTHN1_02006) - 1780902..1781672 (-) 771 WP_060384069.1 ABC transporter permease -
  TTHNP4_RS09950 (TTHN1_02007) - 1781665..1782543 (-) 879 WP_124105293.1 ABC transporter ATP-binding protein -
  TTHNP4_RS09960 (TTHN1_02010) - 1782667..1783845 (-) 1179 Protein_1959 CaiB/BaiF CoA transferase family protein -
  TTHNP4_RS09965 (TTHN1_02011) - 1783876..1784661 (+) 786 WP_124105294.1 carbohydrate ABC transporter permease -
  TTHNP4_RS09975 (TTHN1_02012) rarA 1784948..1786213 (-) 1266 WP_124105295.1 replication-associated recombination protein A Machinery gene
  TTHNP4_RS09980 (TTHN1_02013) - 1786244..1786921 (+) 678 WP_172596944.1 hypothetical protein -
  TTHNP4_RS09985 - 1787183..1787299 (-) 117 Protein_1963 GTP-binding protein -
  TTHNP4_RS09990 (TTHN1_02014) - 1787401..1788264 (+) 864 WP_124105297.1 DUF1028 domain-containing protein -
  TTHNP4_RS09995 (TTHN1_02015) - 1788255..1788635 (+) 381 WP_014630335.1 NUDIX hydrolase -
  TTHNP4_RS10000 (TTHN1_02016) - 1788616..1789308 (+) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  TTHNP4_RS10005 (TTHN1_02017) folE 1789347..1789967 (+) 621 WP_008633832.1 GTP cyclohydrolase I FolE -
  TTHNP4_RS10010 (TTHN1_02018) - 1789980..1791167 (-) 1188 WP_124105298.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45881.58 Da        Isoelectric Point: 7.2544

>NTDB_id=992891 TTHNP4_RS09975 WP_124105295.1 1784948..1786213(-) (rarA) [Thermus thermophilus isolate TTHNAR1]
MGEVEPLAERLRPRTLDEVLGQPHLTGPKGLLRRMLEAGQLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEIHRFNKAQQDALLPHLESGLLTLIGATAENPAFHLVPALRSRLRLLPVRPLGEEDLLAL
LKRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLGSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEATVYLALAP
KSNSLYAAWKRAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQTYLPEGLEGLTLFEATGEGWEE
RVRERLKALRGRFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=992891 TTHNP4_RS09975 WP_124105295.1 1784948..1786213(-) (rarA) [Thermus thermophilus isolate TTHNAR1]
ATGGGGGAGGTGGAACCTCTGGCCGAGCGCCTCCGGCCCCGGACCCTGGACGAAGTCCTGGGCCAGCCCCACCTCACCGG
TCCCAAGGGGCTTCTTAGGCGGATGCTGGAAGCGGGCCAGCTTTCCTCCATGGTCCTCTTCGGCCCCCCAGGCACGGGCA
AAACCACCCTGGCCCGGCTCCTCGCCGAAGGGGTGGGGAGGCCCTTCCTCCGGCTTTCCGCGGTGGAGGCCGGGCTCAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCCAGGGCGAAGGGGGGTCTCGTCCTCTTCCTGGACGAGATCCACCGCTTCAACAA
GGCCCAGCAAGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCCACCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCCTCCTGCCCGTGCGGCCCCTGGGCGAAGAGGACCTCCTCGCCCTC
CTCAAGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTAGGGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGATCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCAGAAGGGGAGCTCGCCCTGGTGGAGGCGACGGTCTACCTGGCCTTAGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAGGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTATTACCACGAGGATAAGGAGG
GTAGCTTCGCCCAAACGTACCTTCCCGAAGGCCTGGAGGGCCTCACCCTCTTCGAGGCCACGGGGGAAGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTAAAGGCGCTTAGGGGGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(176-243)

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.005

100

0.38