Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   EC1639_RS23100 Genome accession   NZ_LR025101
Coordinates   4764724..4765488 (+) Length   254 a.a.
NCBI ID   WP_001136250.1    Uniprot ID   -
Organism   Escherichia coli isolate EC-1639     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4759724..4770488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC1639_RS23080 (EC1639_04608) acpT 4760678..4761265 (+) 588 WP_000285781.1 4'-phosphopantetheinyl transferase AcpT -
  EC1639_RS23085 (EC1639_04609) nikA 4761376..4762950 (+) 1575 WP_000953368.1 nickel ABC transporter substrate-binding protein -
  EC1639_RS23090 (EC1639_04610) nikB 4762950..4763894 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  EC1639_RS23095 (EC1639_04611) nikC 4763891..4764724 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  EC1639_RS23100 (EC1639_04612) amiE 4764724..4765488 (+) 765 WP_001136250.1 nickel import ATP-binding protein NikD Regulator
  EC1639_RS23105 (EC1639_04613) nikE 4765485..4766291 (+) 807 WP_001586378.1 nickel import ATP-binding protein NikE -
  EC1639_RS23110 (EC1639_04614) nikR 4766297..4766698 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  EC1639_RS23115 (EC1639_04615) - 4766897..4767643 (+) 747 WP_001329803.1 GntR family transcriptional regulator -
  EC1639_RS23120 (EC1639_04616) - 4767668..4768141 (+) 474 WP_001306344.1 PTS sugar transporter subunit IIA -
  EC1639_RS23125 (EC1639_04617) - 4768138..4768419 (+) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  EC1639_RS23130 (EC1639_04618) - 4768496..4769854 (+) 1359 WP_001306345.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=992838 EC1639_RS23100 WP_001136250.1 4764724..4765488(+) (amiE) [Escherichia coli isolate EC-1639]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGSSGSGKSLTCAAALGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=992838 EC1639_RS23100 WP_001136250.1 4764724..4765488(+) (amiE) [Escherichia coli isolate EC-1639]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAACCGCTGGTGCACGGCGTATCGTTAACTCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCAGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCCGCACTGGGCATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTTCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCCACGCTTACCGCTGCTTTAGAAGCGGTGGGGTTGGAAAACGCCGCGCGCGTGT
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGTTGTGTGAATCGCCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCACACGGTAAAATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAATGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment