Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAIA70_RS00625 Genome accession   NZ_CP154264
Coordinates   141173..141898 (-) Length   241 a.a.
NCBI ID   WP_029788954.1    Uniprot ID   A0A9X3MHW5
Organism   Vibrio harveyi strain 45T2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136173..146898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA70_RS00600 (AAIA70_00600) - 137330..137821 (+) 492 WP_343291411.1 type II secretion system protein M -
  AAIA70_RS00605 (AAIA70_00605) - 137823..138584 (+) 762 WP_343291099.1 type II secretion system protein N -
  AAIA70_RS00610 (AAIA70_00610) cysQ 138874..139701 (-) 828 WP_343291100.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AAIA70_RS00615 (AAIA70_00615) nudE 139749..140315 (-) 567 WP_343291101.1 ADP compounds hydrolase NudE -
  AAIA70_RS00620 (AAIA70_00620) nfuA 140491..141075 (-) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  AAIA70_RS00625 (AAIA70_00625) comF 141173..141898 (-) 726 WP_029788954.1 ComF family protein Machinery gene
  AAIA70_RS00630 (AAIA70_00630) bioH 141983..142747 (+) 765 WP_343291102.1 pimeloyl-ACP methyl ester esterase BioH -
  AAIA70_RS00635 (AAIA70_00635) - 142884..143348 (+) 465 WP_009698973.1 hypothetical protein -
  AAIA70_RS00640 (AAIA70_00640) - 143453..145774 (-) 2322 WP_053050476.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27667.71 Da        Isoelectric Point: 8.4332

>NTDB_id=992771 AAIA70_RS00625 WP_029788954.1 141173..141898(-) (comF) [Vibrio harveyi strain 45T2]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KVFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=992771 AAIA70_RS00625 WP_029788954.1 141173..141898(-) (comF) [Vibrio harveyi strain 45T2]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCTTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGGTATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

92.116

100

0.921
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469

Multiple sequence alignment