Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QMG95_RS00805 Genome accession   NZ_AP027045
Coordinates   169473..170183 (-) Length   236 a.a.
NCBI ID   WP_200766493.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164473..175183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG95_RS00780 (TUMSATVNIG1_01450) - 164782..165540 (+) 759 WP_004404510.1 type II secretion system protein N -
  QMG95_RS00785 (TUMSATVNIG1_01460) nudE 165700..166254 (+) 555 WP_200766491.1 ADP compounds hydrolase NudE -
  QMG95_RS00790 (TUMSATVNIG1_01470) cysQ 166266..167084 (+) 819 WP_022551827.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  QMG95_RS00795 (TUMSATVNIG1_01480) - 167385..168704 (+) 1320 WP_200766492.1 trypsin-like serine protease -
  QMG95_RS00800 (TUMSATVNIG1_01490) nfuA 168795..169382 (-) 588 WP_004404517.1 Fe-S biogenesis protein NfuA -
  QMG95_RS00805 (TUMSATVNIG1_01500) comF 169473..170183 (-) 711 WP_200766493.1 phosphoribosyltransferase family protein Machinery gene
  QMG95_RS00810 (TUMSATVNIG1_01510) bioH 170260..171024 (+) 765 WP_200766494.1 pimeloyl-ACP methyl ester esterase BioH -
  QMG95_RS00815 (TUMSATVNIG1_01520) - 171165..171629 (+) 465 WP_200766495.1 ATP-dependent Lon protease -
  QMG95_RS00820 (TUMSATVNIG1_01530) plsB 171687..174110 (-) 2424 WP_200766496.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  QMG95_RS00825 (TUMSATVNIG1_01540) lexA 174440..175057 (+) 618 WP_004404532.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27338.86 Da        Isoelectric Point: 8.5432

>NTDB_id=99269 QMG95_RS00805 WP_200766493.1 169473..170183(-) (comF) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
MVISSWLKLKLHRYFNLQCPLCGLNIEEPTPETRWCRHCLNSMSDPCRCQCCGLPTLEPVEFCGECLSNPPPWRRLYCVN
DYRPPLSHYIHSLKFQHQFRLARDLSYLLAQKIAEPADVITSVPLHWRRELIRGYNQSDHLARALCQHLNMPERFNPNLF
KRVKYTAPQLGQDKKARHRNLYGAFRLIAPPAAKHVAIVDDVVTTGSTIRQMCNLLLDVGVETIDIYCICRTPEPK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=99269 QMG95_RS00805 WP_200766493.1 169473..170183(-) (comF) [Vibrio nigripulchritudo strain TUMSAT-V.nig1]
ATGGTGATTTCCAGCTGGCTAAAGCTCAAATTACACCGTTATTTTAATCTGCAATGCCCGCTATGTGGTCTGAACATTGA
AGAACCTACACCAGAAACACGATGGTGCAGACATTGCCTGAACAGCATGAGCGATCCTTGCCGTTGCCAATGCTGCGGGC
TACCGACTTTGGAACCTGTTGAATTCTGTGGTGAGTGCTTAAGCAACCCGCCTCCCTGGCGCCGTCTGTATTGTGTAAAC
GACTATCGTCCACCGCTTTCGCATTATATCCACAGCCTGAAATTTCAGCATCAGTTTCGTCTAGCCCGTGACCTCAGCTA
CTTACTTGCGCAGAAAATTGCAGAGCCTGCCGACGTGATTACTTCTGTCCCACTTCACTGGCGCAGAGAACTGATACGCG
GCTACAACCAGAGTGACCATCTGGCAAGAGCATTGTGTCAGCATCTCAATATGCCCGAACGATTTAATCCGAATCTGTTC
AAGCGGGTGAAATATACTGCACCTCAACTCGGTCAGGATAAAAAGGCCAGACATAGAAACCTTTATGGTGCTTTTCGGTT
AATTGCGCCTCCAGCTGCAAAGCACGTAGCAATCGTCGACGATGTGGTGACAACGGGCAGCACTATCCGACAAATGTGTA
ATTTACTGCTTGATGTTGGCGTAGAAACCATCGATATTTACTGCATATGCCGAACCCCTGAGCCGAAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.766

99.576

0.525
  comF Vibrio campbellii strain DS40M4

48.548

100

0.496

Multiple sequence alignment