Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PADK1_RS26515 Genome accession   NZ_LN870292
Coordinates   5625842..5626438 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa DK1 substr. NH57388A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5620842..5631438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK1_RS26495 (PADK1_05170) aroK 5621985..5622503 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PADK1_RS26500 (PADK1_05171) pilQ 5622515..5624647 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  PADK1_RS26505 (PADK1_05172) comL/pilP 5624701..5625225 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PADK1_RS26510 (PADK1_05173) pilO 5625222..5625845 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PADK1_RS26515 (PADK1_05174) pilN 5625842..5626438 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PADK1_RS26520 (PADK1_05175) pilM 5626438..5627502 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PADK1_RS26525 (PADK1_05176) - 5627687..5630155 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=992425 PADK1_RS26515 WP_003095839.1 5625842..5626438(-) (pilN) [Pseudomonas aeruginosa DK1 substr. NH57388A]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=992425 PADK1_RS26515 WP_003095839.1 5625842..5626438(-) (pilN) [Pseudomonas aeruginosa DK1 substr. NH57388A]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ATAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369