Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABCIP7010_RS17920 Genome accession   NZ_LN865143
Coordinates   3851899..3853164 (-) Length   421 a.a.
NCBI ID   WP_001284003.1    Uniprot ID   -
Organism   Acinetobacter baumannii isolate CIP70.10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3846899..3858164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABCIP7010_RS17890 (ABCIP7010_3616) pncA 3847124..3847768 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  ABCIP7010_RS17895 (ABCIP7010_3617) dapA 3848098..3848991 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ABCIP7010_RS17900 (ABCIP7010_3618) - 3849007..3849609 (+) 603 WP_001177091.1 hypothetical protein -
  ABCIP7010_RS17905 (ABCIP7010_3619) purC 3849646..3850365 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABCIP7010_RS17910 (ABCIP7010_3620) - 3850556..3850759 (+) 204 WP_000418560.1 hypothetical protein -
  ABCIP7010_RS17915 (ABCIP7010_3621) - 3851045..3851884 (+) 840 WP_031965447.1 formate/nitrite transporter family protein -
  ABCIP7010_RS17920 (ABCIP7010_3622) rarA 3851899..3853164 (-) 1266 WP_001284003.1 replication-associated recombination protein A Machinery gene
  ABCIP7010_RS17925 (ABCIP7010_3623) - 3853270..3854442 (-) 1173 WP_031965446.1 PQQ-dependent sugar dehydrogenase -
  ABCIP7010_RS17930 (ABCIP7010_3624) - 3854552..3855010 (-) 459 WP_031965445.1 YcgN family cysteine cluster protein -
  ABCIP7010_RS17935 (ABCIP7010_3625) - 3855205..3855363 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  ABCIP7010_RS17940 (ABCIP7010_3626) - 3855535..3856272 (+) 738 WP_000100771.1 dienelactone hydrolase family protein -
  ABCIP7010_RS17945 (ABCIP7010_3627) - 3856458..3856820 (+) 363 WP_000130110.1 HIT family protein -
  ABCIP7010_RS17950 (ABCIP7010_3628) mutY 3856961..3857995 (+) 1035 WP_001113875.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46918.57 Da        Isoelectric Point: 5.8354

>NTDB_id=992204 ABCIP7010_RS17920 WP_001284003.1 3851899..3853164(-) (rarA) [Acinetobacter baumannii isolate CIP70.10]
MSDSHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=992204 ABCIP7010_RS17920 WP_001284003.1 3851899..3853164(-) (rarA) [Acinetobacter baumannii isolate CIP70.10]
ATGTCAGACTCCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGAGTA
AAAGAATTACGTGAAGTAATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAGTCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCCACCACTGAAAACCCAT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTTGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387

Multiple sequence alignment