Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SABB155_RS05860 Genome accession   NZ_LN854556
Coordinates   1195306..1196079 (+) Length   257 a.a.
NCBI ID   WP_054190201.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BB155     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1190306..1201079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS05840 (SABB155_10860) trmFO 1190650..1191957 (+) 1308 WP_054190203.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SABB155_RS05845 (SABB155_10870) xerC 1192374..1193270 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  SABB155_RS05850 (SABB155_10880) hslV 1193267..1193812 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SABB155_RS05855 (SABB155_10890) hslU 1193878..1195281 (+) 1404 WP_061745601.1 ATP-dependent protease ATPase subunit HslU -
  SABB155_RS05860 (SABB155_10900) codY 1195306..1196079 (+) 774 WP_054190201.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SABB155_RS05865 - 1196130..1196222 (+) 93 WP_031788481.1 hypothetical protein -
  SABB155_RS05870 (SABB155_10910) rpsB 1196421..1197188 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SABB155_RS05875 - 1197222..1197335 (+) 114 WP_001789890.1 hypothetical protein -
  SABB155_RS05880 (SABB155_10920) tsf 1197370..1198251 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SABB155_RS05885 (SABB155_10930) pyrH 1198388..1199110 (+) 723 WP_000057330.1 UMP kinase -
  SABB155_RS05890 (SABB155_10940) frr 1199129..1199683 (+) 555 WP_001280006.1 ribosome recycling factor -
  SABB155_RS05895 (SABB155_10950) - 1200056..1200826 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28771.19 Da        Isoelectric Point: 6.0680

>NTDB_id=992075 SABB155_RS05860 WP_054190201.1 1195306..1196079(+) (codY) [Staphylococcus aureus strain BB155]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPTEYTERLM
EVKQTESNIDIDNALTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGMEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=992075 SABB155_RS05860 WP_054190201.1 1195306..1196079(+) (codY) [Staphylococcus aureus strain BB155]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAACTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGCATTAACAGTTTTCCCGCCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTATGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment