Detailed information NTG0992037

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHY69_RS21370
• Genome accession: NZ_CP153720
• Coordinates: 4354794..4355594 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn4710
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4349794..4360594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHY69_RS21335 (AAHY69_21310)	gspH	4349950..4350465 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
AAHY69_RS21340 (AAHY69_21315)	gspI	4350462..4350827 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHY69_RS21345 (AAHY69_21320)	gspJ	4350824..4351420 (+)	597	WP_009309266.1	type II secretion system minor pseudopilin GspJ	-
AAHY69_RS21350 (AAHY69_21325)	gspK	4351417..4352403 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
AAHY69_RS21355 (AAHY69_21330)	gspL	4352390..4353583 (+)	1194	WP_048265188.1	type II secretion system protein GspL	-
AAHY69_RS21360 (AAHY69_21335)	-	4353576..4354061 (+)	486	WP_004145896.1	type II secretion system protein M	-
AAHY69_RS21365 (AAHY69_21340)	-	4354051..4354797 (+)	747	WP_065888578.1	type II secretion system protein N	-
AAHY69_RS21370 (AAHY69_21345)	pilD	4354794..4355594 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAHY69_RS21375 (AAHY69_21350)	hrpB	4355642..4358071 (-)	2430	WP_004177388.1	ATP-dependent helicase HrpB	-
AAHY69_RS21380 (AAHY69_21355)	thpR	4358144..4358680 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHY69_RS21385 (AAHY69_21360)	sfsA	4358680..4359396 (+)	717	WP_373854386.1	DNA/RNA nuclease SfsA	-
AAHY69_RS21390 (AAHY69_21365)	dksA	4359559..4360014 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=992037 AAHY69_RS21370 WP_004145898.1 4354794..4355594(+) (pilD) [Klebsiella pneumoniae strain Kpn4710]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992037 AAHY69_RS21370 WP_004145898.1 4354794..4355594(+) (pilD) [Klebsiella pneumoniae strain Kpn4710]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAACTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425