Detailed information NTG0992015

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHZ15_RS21695
• Genome accession: NZ_CP153718
• Coordinates: 4354232..4355032 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn3020
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4349232..4360032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHZ15_RS21660 (AAHZ15_21610)	gspH	4349388..4349903 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
AAHZ15_RS21665 (AAHZ15_21615)	gspI	4349900..4350265 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHZ15_RS21670 (AAHZ15_21620)	gspJ	4350262..4350858 (+)	597	WP_071081183.1	type II secretion system minor pseudopilin GspJ	-
AAHZ15_RS21675 (AAHZ15_21625)	gspK	4350855..4351841 (+)	987	WP_373855462.1	type II secretion system minor pseudopilin GspK	-
AAHZ15_RS21680 (AAHZ15_21630)	gspL	4351828..4353021 (+)	1194	WP_080851652.1	type II secretion system protein GspL	-
AAHZ15_RS21685 (AAHZ15_21635)	-	4353014..4353499 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAHZ15_RS21690 (AAHZ15_21640)	-	4353489..4354235 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAHZ15_RS21695 (AAHZ15_21645)	pilD	4354232..4355032 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
AAHZ15_RS21700 (AAHZ15_21650)	hrpB	4355080..4357509 (-)	2430	WP_040225255.1	ATP-dependent helicase HrpB	-
AAHZ15_RS21705 (AAHZ15_21655)	thpR	4357582..4358118 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHZ15_RS21710 (AAHZ15_21660)	sfsA	4358118..4358834 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHZ15_RS21715 (AAHZ15_21665)	dksA	4358997..4359452 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=992015 AAHZ15_RS21695 WP_004145898.1 4354232..4355032(+) (pilD) [Klebsiella pneumoniae strain Kpn3020]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=992015 AAHZ15_RS21695 WP_004145898.1 4354232..4355032(+) (pilD) [Klebsiella pneumoniae strain Kpn3020]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425